Jonathan Lin

Dr. Jonathan Lin

Departments of Ophthalmology and Pathology, Stanford University, Stanford, CA, USA

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 January 2009 in PLOS ONE
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Journal Article
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JLJonathan Lin
Jonathan Lin
HLHan Li
Han Li
YZYuhong Zhang
Yuhong Zhang
DRDavid Ron
David Ron
PWPeter Walter
Peter Walter
Protein misfolding in the endoplasmic reticulum (ER) activates a set of intracellular signaling pathways, collectively termed the Unfolded Protein Response (UPR). UPR signaling promotes cell survival by reducing misfolded protein levels. If homeostasis cannot be restored, UPR signaling promotes cell death. The molecular basis for the switch between prosurvival and proapoptotic UPR function is poorly understood. The ER-resident proteins, PERK and IRE1, control two key UPR signaling pathways. Protein misfolding concomitantly activates PERK and IRE1 and has clouded insight into their contributions toward life or death cell fates. Here, we employed chemical-genetic strategies to activate individually PERK or IRE1 uncoupled from protein misfolding. We found that sustained PERK signaling impaired cell proliferation and promoted apoptosis. By contrast, equivalent durations of IRE1 signaling enhanced cell proliferation without promoting cell death. These results demonstrate that extended PERK and IRE1 signaling have opposite effects on cell viability. Differential activation of PERK and IRE1 may determine life or death decisions after ER protein misfolding.

1 June 2015 in Nature Genetics
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Journal Article
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SKSusanne Kohl
Susanne Kohl
DZDitta Zobor
Ditta Zobor
WCWei-Chieh Chiang
Wei-Chieh Chiang
NWNicole Weisschuh
Nicole Weisschuh
JSJennifer Staller
Jennifer Staller
JLJonathan Lin
Jonathan Lin

1 July 2015 in The American Journal of Pathology
Verified
Journal Article
Closed access
NHNobuhiko Hiramatsu
Nobuhiko Hiramatsu
WCWei-Chieh Chiang
Wei-Chieh Chiang
TKTimothy D. Kurt
Timothy D. Kurt
CSChristina J. Sigurdson
Christina J. Sigurdson
JLJonathan Lin
Jonathan Lin

2 October 2014 in Molecular Neurobiology
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Journal Article
Closed access
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WCWei-Chieh Chiang
Wei-Chieh Chiang
HKHeike Kroeger
Heike Kroeger
SSSanae Sakami
Sanae Sakami
CMCarissa Messah
Carissa Messah
DYDouglas Yasumura
Douglas Yasumura
JLJonathan Lin
Jonathan Lin

1 May 2014 in Molecular Biology of the Cell
Verified
Journal Article
Open access
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NHNobuhiko Hiramatsu
Nobuhiko Hiramatsu
CMCarissa Messah
Carissa Messah
JHJaeseok Han
Jaeseok Han
MLMatthew M. LaVail
Matthew M. LaVail
RKRandal J. Kaufman
Randal J. Kaufman
JLJonathan Lin
Jonathan Lin
Endoplasmic reticulum (ER) protein misfolding activates the unfolded protein response (UPR) to help cells cope with ER stress. If ER homeostasis is not restored, UPR promotes cell death. The mechanisms of UPR-mediated cell death are poorly understood. The PKR-like endoplasmic reticulum kinase (PERK) arm of the UPR is implicated in ER stress–induced cell death, in part through up-regulation of proapoptotic CCAAT/enhancer binding protein homologous protein (CHOP). Chop−/− cells are partially resistant to ER stress–induced cell death, and CHOP overexpression alone does not induce cell death. These findings suggest that additional mechanisms regulate cell death downstream of PERK. Here we find dramatic suppression of antiapoptosis XIAP proteins in response to chronic ER stress. We find that PERK down-regulates XIAP synthesis through eIF2α and promotes XIAP degradation through ATF4. Of interest, PERK's down-regulation of XIAP occurs independently of CHOP activity. Loss of XIAP leads to increased cell death, whereas XIAP overexpression significantly enhances resistance to ER stress–induced cell death, even in the absence of CHOP. Our findings define a novel signaling circuit between PERK and XIAP that operates in parallel with PERK to CHOP induction to influence cell survival during ER stress. We propose a “two-hit” model of ER stress–induced cell death involving concomitant CHOP up-regulation and XIAP down-regulation both induced by PERK.

1 October 2012 in Investigative Ophthalmology & Visual Science
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Journal Article
Closed access
WCWei-Chieh Chiang
Wei-Chieh Chiang
NHNobuhiko Hiramatsu
Nobuhiko Hiramatsu
CMCarissa Messah
Carissa Messah
HKHeike Kroeger
Heike Kroeger
JLJonathan Lin
Jonathan Lin
Many rhodopsin mutations that cause retinitis pigmentosa produce misfolded rhodopsin proteins that are retained within the endoplasmic reticulum (ER) and cause photoreceptor cell death. Activating transcription factor 6 (ATF6) and protein kinase RNA-like endoplasmic reticulum kinase (PERK) control intracellular signaling pathways that maintain ER homeostasis. The aim of this study was to investigate how ATF6 and PERK signaling affected misfolded rhodopsin in cells, which could identify new molecular therapies to treat retinal diseases associated with ER protein misfolding. To examine the effect of ATF6 on rhodopsin, wild-type (WT) or mutant rhodopsins were expressed in cells expressing inducible human ATF6f, the transcriptional activator domain of ATF6. Induction of ATF6f synthesis rapidly activated downstream genes. To examine PERK's effect on rhodopsin, WT or mutant rhodopsins were expressed in cells expressing a genetically altered PERK protein, Fv2E-PERK. Addition of the dimerizing molecule (AP20187) rapidly activated Fv2E-PERK and downstream genes. By use of these strategies, it was examined how selective ATF6 or PERK signaling affected the fate of WT and mutant rhodopsins. ATF6 significantly reduced T17M, P23H, Y178C, C185R, D190G, K296E, and S334ter rhodopsin protein levels in the cells with minimal effects on monomeric WT rhodopsin protein levels. By contrast, the PERK pathway reduced both levels of WT, mutant rhodopsins, and many other proteins in the cell. This study indicates that selectively activating ATF6 or PERK prevents mutant rhodopsin from accumulating in cells. ATF6 signaling may be especially useful in treating retinal degenerative diseases arising from rhodopsin misfolding by preferentially clearing mutant rhodopsin and abnormal rhodopsin aggregates.