Ke Niu

Ke Niu


Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 January 2020 in Complexity
Verified
Journal Article
Open access
PDF file
KNKe Niu
Ke Niu
JGJiayang Guo
Jiayang Guo
YPYijie Pan
Yijie Pan
XGXin Gao
Xin Gao
XPXueping Peng
Xueping Peng
HLHailong Li
Hailong Li
Autism spectrum disorder (ASD) is a developmental disorder that impacts more than 1.6% of children aged 8 across the United States. It is characterized by impairments in social interaction and communication, as well as by a restricted repertoire of activity and interests. The current standardized clinical diagnosis of ASD remains to be a subjective diagnosis, mainly relying on behavior-based tests. However, the diagnostic process for ASD is not only time consuming, but also costly, causing a tremendous financial burden for patients’ families. Therefore, automated diagnosis approaches have been an attractive solution for earlier identification of ASD. In this work, we set to develop a deep learning model for automated diagnosis of ASD. Specifically, a multichannel deep attention neural network (DANN) was proposed by integrating multiple layers of neural networks, attention mechanism, and feature fusion to capture the interrelationships in multimodality data. We evaluated the proposed multichannel DANN model on the Autism Brain Imaging Data Exchange (ABIDE) repository with 809 subjects (408 ASD patients and 401 typical development controls). Our model achieved a state-of-the-art accuracy of 0.732 on ASD classification by integrating three scales of brain functional connectomes and personal characteristic data, outperforming multiple peer machine learning models in a k-fold cross validation experiment. Additional k-fold and leave-one-site-out cross validation were conducted to test the generalizability and robustness of the proposed multichannel DANN model. The results show promise for deep learning models to aid the future automated clinical diagnosis of ASD.

12 November 2022 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
KNKe Niu
Ke Niu
ZGZhongmin Guo
Zhongmin Guo
XPXueping Peng
Xueping Peng
SPSu Pei
Su Pei

7 February 2022 in Journal of Biomedical Informatics
Verified
Journal Article
Closed access
KNKe Niu
Ke Niu
YLYou Lu
You Lu
XPXueping Peng
Xueping Peng
JZJingni Zeng
Jingni Zeng

8 March 2023 in Frontiers in Molecular Biosciences
Verified
Journal Article
Open access
KNKe Niu
Ke Niu
KZKe Zhang
Ke Zhang
XPXueping Peng
Xueping Peng
YPYijie Pan
Yijie Pan
NXNaian Xiao
Naian Xiao
In intensive care units (ICUs), mortality prediction is performed by combining information from these two sources of ICU patients by monitoring patient health. Respectively, time series data generated from each patient admission to the ICU and clinical records consisting of physician diagnostic summaries. However, existing mortality prediction studies mainly cascade the multimodal features of time series data and clinical records for prediction, ignoring thecross-modal correlation between the underlying features in different modal data. To address theseissues, we propose a multimodal fusion model for mortality prediction that jointly models patients’ time-series data as well as clinical records. We apply a fine-tuned Bert model (Bio-Bert) to the patient’s clinical record to generate a holistic embedding of the text part, which is then combined with the output of an LSTM model encoding the patient’s time-series data to extract valid features. The global contextual information of each modal data is extracted using the improved fusion module to capture the correlation between different modal data. Furthermore, the improved fusion module can be easily added to the fusion features of any unimodal network and utilize existing pre-trained unimodal model weights. We use a real dataset containing 18904 ICU patients to train and evaluate our model, and the research results show that the representations obtained by themodel can achieve better prediction accuracy compared to the baseline.

8 August 2023 in Neural Computing and Applications
Verified
Journal Article
Closed access
PDF file
KNKe Niu
Ke Niu
GLGuoqiang Lu
Guoqiang Lu
XPXueping Peng
Xueping Peng
YZYuhang Zhou
Yuhang Zhou
JZJingni Zeng
Jingni Zeng
KZKe Zhang
Ke Zhang

16 January 2025 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
HLHeng Li
Heng Li
MOMingyang Ou
Mingyang Ou
HLHaojin Li
Haojin Li
ZQZhongxi Qiu
Zhongxi Qiu
KNKe Niu
Ke Niu
JLJiang Liu
Jiang Liu
Cataract surgery, a widely performed operation worldwide, is incorporating semantic segmentation to advance computer-assisted intervention. However, the tissue appearance and illumination in cataract surgery often differ among clinical centers, intensifying the issue of domain shifts. While domain adaptation offers remedies to the shifts, the necessity for data centralization raises additional privacy concerns. To overcome these challenges, we propose a Multi-view Test-time Adaptation algorithm (MUTA) to segment cataract surgical scenes, which leverages multi-view learning to enhance model training within the source domain and model adaptation within the target domain. In the training phase, the segmentation model is equipped with multi-view decoders to boost its robustness against variations in cataract surgery. During the inference phase, test-time adaptation is implemented using multi-view knowledge distillation, enabling model updates in clinics without data centralization or privacy concerns. We conducted experiments in a simulated cross-center scenario using several cataract surgery datasets to evaluate the effectiveness of MUTA. Through comparisons and investigations, we have validated that MUTA effectively learns a robust source model and adapts the model to target data during the practical inference phase. Code and datasets are available at https://github.com/liamheng/CAI-algorithms.