Kudret Kama

Dr. Kudret Kama

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Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 December 2024 in BMC Medical Informatics and Decision Making
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JOJuan G. Diaz Ochoa
Juan G. Diaz Ochoa
FMFaizan E. Mustafa
Faizan E. Mustafa
FWFelix Weil
Felix Weil
YWYi Wang
Yi Wang
KKKudret Kama
Kudret Kama
MKMarkus Knott
Markus Knott
Medical narratives are fundamental to the correct identification of a patient’s health condition. This is not only because it describes the patient’s situation. It also contains relevant information about the patient’s context and health state evolution. Narratives are usually vague and cannot be categorized easily. On the other hand, once the patient’s situation is correctly identified based on a narrative, it is then possible to map the patient’s situation into precise classification schemas and ontologies that are machine-readable. To this end, language models can be trained to read and extract elements from these narratives. However, the main problem is the lack of data for model identification and model training in languages other than English. First, gold standard annotations are usually not available due to the high level of data protection for patient data. Second, gold standard annotations (if available) are difficult to access. Alternative available data, like MIMIC (Sci Data 3:1, 2016) is written in English and for specific patient conditions like intensive care. Thus, when model training is required for other types of patients, like oncology (and not intensive care), this could lead to bias. To facilitate clinical narrative model training, a method for creating high-quality synthetic narratives is needed. We devised workflows based on generative AI methods to synthesize narratives in the German language to avoid the disclosure of patient’s health data. Since we required highly realistic narratives, we generated prompts, written with high-quality medical terminology, asking for clinical narratives containing both a main and co-disease. The frequency of distribution of both the main and co-disease was extracted from the hospital’s structured data, such that the synthetic narratives reflect the disease distribution among the patient’s cohort. In order to validate the quality of the synthetic narratives, we annotated them to train a Named Entity Recognition (NER) algorithm. According to our assumptions, the validation of this system implies that the synthesized data used for its training are of acceptable quality. We report precision, recall and F1 score for the NER model while also considering metrics that take into account both exact and partial entity matches. Trained models are cautious, with a precision up to 0.8 for Entity Type match metric and a F1 score of 0.3. Despite its inherent limitations, this technology has the potential to allow data interoperability by using encoded diseases across languages and regions without compromising data safety. Additionally, it facilitates the synthesis of unstructured patient data. In this way, the identification and training of models can be accelerated. We believe that this method may be able to generate discharge letters for any combination of main and co-diseases, which will significantly reduce the amount of time spent writing these letters by healthcare professionals.

11 December 2025 in Haematologica
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KKKudret Kama
Kudret Kama
HTHannes Treiber
Hannes Treiber
AKAlexandra Kutilina
Alexandra Kutilina
STStefan Trefz
Stefan Trefz
SWSophie Wollnitza
Sophie Wollnitza
ESElisabeth Schorb
Elisabeth Schorb

30 January 2026 in Cancers
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JWJulia Wendler
Julia Wendler
BKBenjamin Kasenda
Benjamin Kasenda
ELEliza Lauer
Eliza Lauer
KKKudret Kama
Kudret Kama
LILisa Kristina Isbell
Lisa Kristina Isbell
Gerald IllerhausGerald Illerhaus
Gerald Illerhaus
Background/Objectives: Relapsed and refractory (rr) primary large B-cell lymphoma of the central nervous system (PCNSL) has a dismal prognosis, and the standard of care is not established. The most common genetic imbalance includes the B-cell lymphoma 2 (BCL-2) locus. Methods: We planned a bi-centric phase Ib dose-escalation study with the chemotherapy-free combination of the BCL-2 inhibitor venetoclax and CD20 antibody obinutuzumab for rrPCNSL patients in Germany. The intended treatment consisted of 6 cycles of fixed-dose obinutuzumab at 1000 mg intravenously every 3 weeks, and an oral daily dose of 600, 800, or 1000 mg venetoclax, depending on the planned dosing group, followed by a 12-month venetoclax maintenance period. The primary endpoint was the pharmacokinetics of venetoclax and obinutuzumab in cerebrospinal fluid (CSF). Results: This study was prematurely terminated after registration of 5/15 (33%) patients in dosing group 1 (600 mg oral daily dose of venetoclax) between May 2020 and November 2021. The mean ratio of the concentration of venetoclax in CSF over peripheral blood was 0.55% (±0.28 standard deviation (SD)) and 0.25% (±0.23 SD) for obinutuzumab. Two of five patients achieved complete remission, and each one patient achieved partial remission and stable disease as best response. The median duration of response was 6.5 months (range 0.7–47). Conclusions: Venetoclax and obinutuzumab can penetrate into the central nervous system, but the CSF concentration did not correlate with the outcome. The combination is feasible, tolerable, and may lead to durable responses in selected rrPCNSL patients.