Aiming at the high-precision position control of electro-hydraulic servo pump control system, a compensation control algorithm based on fuzzy control theory is proposed based on the classical PID control algorithm for the control of factors such as oil compression and system leakage. Firstly, a mathematical model of the system was established, and online identification of load disturbance was carried out. Then, oil compression and system leakage compensation controllers were established, and the position error caused by the load disturbance was compensated based on fuzzy control rules. Finally, the position control effect was verified using an experimental platform. The results show that the load disturbance compensation control strategy can significantly reduce the influence of load disturbance of the system. The steady-state accuracy of the system reached ±0.01 mm, which significantly enhanced the anti-disturbance ability of the system.