Thomas Burke

Dr. Thomas Burke


Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 July 2013 in mBio
Verified
Journal Article
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CWChelsea E Witte
Chelsea E Witte
AWAaron T Whiteley
Aaron T Whiteley
TBThomas Burke
Thomas Burke
JSJohn-Demian Sauer
John-Demian Sauer
DPDaniel Portnoy
Daniel Portnoy
JWJoshua J Woodward
Joshua J Woodward
Listeria monocytogenesinfection leads to robust induction of an innate immune signaling pathway referred to as the cytosolic surveillance pathway (CSP), characterized by expression of beta interferon (IFN-β) and coregulated genes. We previously identified the IFN-β stimulatory ligand as secreted cyclic di-AMP. Synthesis of c-di-AMP inL. monocytogenesis catalyzed by the diadenylate cyclase DacA, and multidrug resistance transporters are necessary for secretion. To identify additional bacterial factors involved inL. monocytogenesdetection by the CSP, we performed a forward genetic screen for mutants that induced altered levels of IFN-β. One mutant that stimulated elevated levels of IFN-β harbored a transposon insertion in the genelmo0052. Lmo0052, renamed here PdeA, has homology to a cyclic di-AMP phosphodiesterase, GdpP (formerly YybT), ofBacillus subtilisand is able to degrade c-di-AMP to the linear dinucleotide pApA. Reduction of c-di-AMP levels by conditional depletion of the di-adenylate cyclase DacA or overexpression of PdeA led to marked decreases in growth rates, bothin vitroand in macrophages. Additionally, mutants with altered levels of c-di-AMP had different susceptibilities to peptidoglycan-targeting antibiotics, suggesting that the molecule may be involved in regulating cell wall homeostasis. During intracellular infection, increases in c-di-AMP production led to hyperactivation of the CSP. Conditional depletion ofdacAalso led to increased IFN-β expression and a concomitant increase in host cell pyroptosis, a result of increased bacteriolysis and subsequent bacterial DNA release. These data suggest that c-di-AMP coordinates bacterial growth, cell wall stability, and responses to stress and plays a crucial role in the establishment of bacterial infection.IMPORTANCEListeria monocytogenesis a Gram-positive intracellular pathogen and the causative agent of the food-borne illness listeriosis. Upon infection,L. monocytogenesstimulates expression of IFN-β and coregulated genes dependent upon host detection of a secreted bacterial signaling nucleotide, c-di-AMP. Using a forward genetic screen for mutants that induced high levels of host IFN-β expression, we identified a c-di-AMP phosphodiesterase, PdeA, that degrades c-di-AMP. Here we characterizeL. monocytogenesmutants that express enhanced or diminished levels of c-di-AMP. Decreased c-di-AMP levels by conditional depletion of the diadenylate cyclase (DacA) or overexpression of PdeA attenuated bacterial growth and led to bacteriolysis, suggesting that its production is essential for viability and may regulate cell wall metabolism. Mutants lacking PdeA had a distinct transcriptional profile, which may provide insight into additional roles for the molecule. This work demonstrates that c-di-AMP is a critical signaling molecule required for bacterial replication, cell wall stability, and pathogenicity.

11 July 2011 in Proceedings of the National Academy of Sciences
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Journal Article
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JSJohn-Demian Sauer
John-Demian Sauer
SPSabine Pereyre
Sabine Pereyre
KAKristina A. Archer
Kristina A. Archer
TBThomas Burke
Thomas Burke
BHBill Hanson
Bill Hanson
DPDaniel A. Portnoy
Daniel A. Portnoy
Inflammasomes are intracellular multiprotein signaling complexes that activate Caspase-1, leading to the cleavage and secretion of IL-1β and IL-18, and ultimately host cell death. Inflammasome activation is a common cellular response to infection; however, the consequences of inflammasome activation during acute infection and in the development of long-term protective immunity is not well understood. To investigate the role of the inflammasome in vivo, we engineered a strain of Listeria monocytogenes that ectopically expresses Legionella pneumophila flagellin, a potent activator of the Nlrc4 inflammasome. Compared with wild-type L. monocytogenes , strains that ectopically secreted flagellin induced robust host cell death and IL-1β secretion. These strains were highly attenuated both in bone marrow-derived macrophages and in vivo compared with wild-type L. monocytogenes . Attenuation in vivo was dependent on Nlrc4, but independent of IL-1β/IL-18 or neutrophil activity. L. monocytogenes strains that activated the inflammasome generated significantly less protective immunity, a phenotype that correlated with decreased induction of antigen-specific T cells. Our data suggest that avoidance of inflammasome activation is a critical virulence strategy for intracellular pathogens, and that activation of the inflammasome leads to decreased long-term protective immunity and diminished T-cell responses.

14 October 2019 in Nature Microbiology
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Journal Article
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PEPatrik Engström
Patrik Engström
TBThomas Burke
Thomas Burke
GMGabriel Mitchell
Gabriel Mitchell
NINadia Ingabire
Nadia Ingabire
KMKevin G. Mark
Kevin G. Mark
MWMatthew D. Welch
Matthew D. Welch

2 March 2020 in Nature Microbiology
Verified
Journal Article
Closed access
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TBThomas Burke
Thomas Burke
PEPatrik Engström
Patrik Engström
RCRoberto A. Chavez
Roberto A. Chavez
JFJoshua A. Fonbuena
Joshua A. Fonbuena
RVRussell E. Vance
Russell E. Vance
MWMatthew D. Welch
Matthew D. Welch

28 February 2012 in Cellular Microbiology
Verified
Journal Article
Open access
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BDBrody J. DeYoung
Brody J. DeYoung
DQDong Qi
Dong Qi
SKSang Hee Kim
Sang Hee Kim
TBThomas Burke
Thomas Burke
RIRoger W. Innes
Roger W. Innes
Nucleotide binding‐leucine rich repeat (NB‐LRR) proteins function as intracellular receptors for the detection of pathogens in both plants and animals. Despite their central role in innate immunity, the molecular mechanisms that govern NB‐LRR activation are poorly understood. The Arabidopsis NB‐LRR protein RPS5 detects the presence of the Pseudomonas syringae effector protein AvrPphB by monitoring the status of the Arabidopsis protein kinase PBS1. AvrPphB is a cysteine protease that targets PBS1 for cleavage at a single site within the activation loop of PBS1. Using a transient expression system in the plant Nicotiana benthamiana and stable transgenic Arabidopsis plants we found that both PBS1 cleavage products are required to activate RPS5 and can do so in the absence of AvrPphB. We also found, however, that the requirement for cleavage of PBS1 could be bypassed simply by inserting five amino acids at the PBS1 cleavage site, which is located at the apex of the activation loop of PBS1. Activation of RPS5 did not require PBS1 kinase function, and thus RPS5 appears to sense a subtle conformational change in PBS1, rather than cleavage. This finding suggests that NB‐LRR proteins may function as fine‐tuned sensors of alterations in the structures of effector targets.

1 November 2014 in Journal of Bacteriology
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Journal Article
Closed access
TBThomas Burke
Thomas Burke
ALAnastasia Loukitcheva
Anastasia Loukitcheva
JZJason Zemansky
Jason Zemansky
RWRichard Wheeler
Richard Wheeler
IBIvo Gomperts Boneca
Ivo Gomperts Boneca
DPDaniel Portnoy
Daniel Portnoy
Listeria monocytogenes is a Gram-positive facultative intracellular pathogen that is highly resistant to lysozyme, a ubiquitous enzyme of the innate immune system that degrades cell wall peptidoglycan. Two peptidoglycan-modifying enzymes, PgdA and OatA, confer lysozyme resistance on L. monocytogenes ; however, these enzymes are also conserved among lysozyme-sensitive nonpathogens. We sought to identify additional factors responsible for lysozyme resistance in L. monocytogenes . A forward genetic screen for lysozyme-sensitive mutants led to the identification of 174 transposon insertion mutations that mapped to 13 individual genes. Four mutants were killed exclusively by lysozyme and not other cell wall-targeting molecules, including the peptidoglycan deacetylase encoded by pgdA , the putative carboxypeptidase encoded by pbpX , the orphan response regulator encoded by degU , and the highly abundant noncoding RNA encoded by rli31 . Both degU and rli31 mutants had reduced expression of pbpX and pgdA , yet DegU and Rli31 did not regulate each other. Since pbpX and pgdA are also present in lysozyme-sensitive bacteria, this suggested that the acquisition of novel enzymes was not responsible for lysozyme resistance, but rather, the regulation of conserved enzymes by DegU and Rli31 conferred high lysozyme resistance. Each lysozyme-sensitive mutant exhibited attenuated virulence in mice, and a time course of infection revealed that the most lysozyme-sensitive strain was killed within 30 min of intravenous infection, a phenotype that was recapitulated in purified blood. Collectively, these data indicate that the genes required for lysozyme resistance are highly upregulated determinants of L. monocytogenes pathogenesis that are required for avoiding the enzymatic activity of lysozyme in the blood.