This study aimed at assessing the climatic factors influencing the wolfberry fruit morphology, and the composition of its nutritious metabolites. The cultivar Ningqi1, widely grown in Northwest China was collected from three typical ecological growing counties with contrasting climatic conditions: Ningxia Zhongning (NF), Xinjiang Jinghe (XF) and Qinghai Nomuhong (QF). During the ripening period, 45 fruits from different plantations at each location were sampled. A total of 393 metabolites were detected in all samples through the widely targeted metabolomics approach and grouped into 19 known classes. Fruits from QF were the biggest followed by those from XF and NF. The altitude, relative humidity and light intensity had negative and strong correlations with most of the metabolites, suggesting that growing wolfberry in very high altitudes and under high light intensity is detrimental for the fruit nutritional quality. Soil moisture content is highly and negatively correlated with vitamins, organic acids and carbohydrates while moderately and positively correlated with other classes of metabolites. In contrast, air and soil temperatures exhibited positive correlation with majority of the metabolites. Overall, our results suggest high soil and air temperatures, low altitude and light intensity and moderate soil moisture, as the suitable conditions to produce Lycium fruits with high content of nutritious metabolites.

Wolfberry (Lycium barbarum L.) is an important economic crop widely grown in China. The effects of salt-alkaline stress on metabolites accumulation in the salt-tolerant Ningqi1 wolfberry fruits were evaluated across 12 salt-alkaline stress gradients. The soil pH, Na⁺, K⁺, Ca²⁺, Mg^2+, and HCO₃⁻ contents decreased at a gradient across the salt-alkaline stress gradients. Based on the widely-targeted metabolomics approach, we identified 457 diverse metabolites, 53% of which were affected by salt-alkaline stress. Remarkably, soil salt-alkaline stress enhanced metabolites accumulation in wolfberry fruits. Amino acids, alkaloids, organic acids, and polyphenols contents increased proportionally across the salt-alkaline stress gradients. In contrast, nucleic acids, lipids, hydroxycinnamoyl derivatives, organic acids and derivatives and vitamins were significantly reduced by high salt-alkaline stress. A total of 13 salt-responsive metabolites represent potential biomarkers for salt-alkaline stress tolerance in wolfberry. Specifically, we found that constant reductions of lipids and chlorogenic acids; up-regulation of abscisic acid and accumulation of polyamines are essential mechanisms for salt-alkaline stress tolerance in Ningqi1. Overall, we provide for the first time some extensive metabolic insights into salt-alkaline stress tolerance and key metabolite biomarkers which may be useful for improving wolfberry tolerance to salt-alkaline stress.

The yield and quality of goji (Lycium barbarum L.) fruit are heavily dependent on fertilizer, especially the availability of nitrogen, phosphorus, and potassium (N, P, and K, respectively). In this study, we performed a metabolomic analysis of the response of goji berry to nitrogen fertilizer levels using an Ultra Performance Liquid Chromatography–Electrospray Ionization–Tandem Mass Spectrometry (UPLC-ESI-MS/MS) method. There was no significant difference in the fruit yield or the commodity grade between N0 (42.5 g/plant), N1 (85 g/plant), and N2 (127.5 g/plant). The primary nutrients of the goji berry changed with an increasing nitrogen fertilization. Comparative metabolomic profiling of three nitrogen levels resulted in the identification of 612 metabolites, including amino acids, flavonoids, carbohydrates, organic acids, and lipids/alcohols, among others, of which 53 metabolites (lipids, fatty acids, organic acids, and phenolamides) demonstrated significant changes. These results provide new insights into the molecular mechanisms of the relationship between yield and quality of goji berry and nitrogen fertilizer.

Lycium barbarum L. (goji berry), a traditional Chinese medicinal plant, depends heavily on nitrogen input to maintain productivity. Nitrogen application also profoundly influences rhizosphere microbial dynamics, which are critical for soil health and plant performance. This study aimed to investigate how the rhizosphere fungal community responds to nitrogen input and explore the potential role of beneficial fungi (e.g., Chaetomium) in goji berry rhizosphere enrichment. A field experiment with four nitrogen levels (0, 53.82, 67.62, and 80.73 g·N m⁻²·year⁻¹, designated as N0, N1, N2, and N3) was conducted to analyze the fungal community structure in the rhizosphere of goji berry using ITS rRNA gene amplicon sequencing. The results showed that nitrogen input significantly altered the rhizosphere fungal community composition and diversity. Redundancy analysis (RDA) and Mantel tests indicated that soil electrical conductivity, total phosphorus, available phosphorus, and nitrate nitrogen were key environmental factors driving the fungal communities’ shifts. Notably, specific fungal genera, including Chaetomium, Cladosporium, Gibberella, Fusarium, Pyxidiophora, Acaulium, and Lophotrichus, exhibited differential enrichment across nitrogen levels. In particular, Chaetomium was significantly enriched under the conventional nitrogen treatment (N2), a strain of Chaetomium sp. LC101 was successfully isolated from the goji berry rhizosphere, and its functional roles were verified via pot experiments. Inoculation with Chaetomium sp. LC101 significantly promoted goji berry growth, with the most pronounced effects observed under N0 treatments, root fresh weight, root vitality, and leaf chlorophyll content increased by up to 55.10%, 15.69%, and 43.27%, respectively, compared to non-inoculated controls. Additionally, Chaetomium sp. LC101 regulated rhizosphere nitrogen transformation by enhancing urease, nitrite reductase, and polyphenol oxidase activities while inhibiting nitrate reductase activity. These findings demonstrate that Chaetomium responds sensitively to nitrogen input, with enrichment under moderate nitrogen levels, and acts as a beneficial rhizosphere fungus by promoting plant growth and regulating nitrogen cycling. This study provides novel insights for nitrogen management in the goji berry industry, where synergistic regulation via “nitrogen reduction combined with microbial inoculation” can reduce nitrogen loss, improve yield and quality through functional fungi, and contribute to ecological sustainability.