Xiaodi Niu

Dr. Xiaodi Niu


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 May 2023 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
FWFengling Wu
Fengling Wu
HWHongsu Wang
Hongsu Wang
JLJianhui Lv
Jianhui Lv
XSXiaomei Shi
Xiaomei Shi
LWLifang Wu
Lifang Wu
XNXiaodi Niu
Xiaodi Niu

15 May 2023 in Journal of Hazardous Materials
Verified
Journal Article
Closed access
HWHongsu Wang
Hongsu Wang
FWFengling Wu
Fengling Wu
LWLifang Wu
Lifang Wu
Jingqi GuanJingqi Guan
Jingqi Guan
XNXiaodi Niu
Xiaodi Niu

25 April 2022 in Nano Research
Verified
Journal Article
Closed access
PDF file
XBXue Bai
Xue Bai
LWLiming Wang
Liming Wang
BNBing Nan
Bing Nan
TTTianmi Tang
Tianmi Tang
XNXiaodi Niu
Xiaodi Niu
Jingqi GuanJingqi Guan
Jingqi Guan
Lack of high-efficiency, cost-efficient, and well-stocked oxygen evolution reaction (OER) electrocatalysts is a main challenge in large-scale implementation of electrolytic water. By regulating the electronic structure of isolated single-atom metal sites, high-performance transition-metal-based catalysts can be fabricated to greatly improve the OER performance. Herein, we demonstrate single-atom manganese coordinated to nitrogen and sulfur species in two-dimensional graphene nanosheets Mn-NSG (NSG means N- and S- codoped graphene) as an active and durable OER catalyst with a low overpotential of 296 mV in alkaline media, compared to that of the benchmark IrO2 catalyst. Theoretical calculations and experimental measurements reveal that the Mn-N3S sites in the graphene matrix are the most active sites for the OER due to modified electronic structure of the Mn site by three nitrogen and one sulfur atoms coordination, which show lower theoretical overpotential than the Mn-N4 sites and over which the O-O formation step is the rate-determining step.

2 December 2023 in Nano Research
Verified
Journal Article
Closed access
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TTTianmi Tang
Tianmi Tang
JHJingyi Han
Jingyi Han
ZWZhenlu Wang
Zhenlu Wang
XNXiaodi Niu
Xiaodi Niu
Jingqi GuanJingqi Guan
Jingqi Guan
The design of diatomic catalysts with uniformly dispersed metal atoms is expected to improve catalytic performance, which is conducive to the intensive comprehending of the synergistic mechanism between dual-metal sites for the oxygen evolution reaction (OER) at the atomic level. Herein, we design a strategy to immobilize bimetallic Fe-Co atoms onto nitrogen-doped graphene to obtain a diatomic catalyst (DA-FC-NG) with FeN3-CoN3 configuration. The DA-FC-NG shows excellent OER activity with a low overpotential (η10 = 268 mV), which is superior to commercial iridium dioxide catalysts. Theoretical calculations uncover that the excellent activity of DA-FC-NG is due to the interaction between Fe and Co diatoms, which causes charge rearrangement and induces the adsorption of intermediates on the Fe–O–Co bridge structure, thus improving the catalytic OER performance. This work is of great significance for the design of highly active diatomic catalysts to replace noble metal catalysts for energy-related applications.

16 October 2015 in Frontiers in Microbiology
Verified
Journal Article
Open access
LWLin Wang
Lin Wang
CBChongwei Bi
Chongwei Bi
HCHongjun Cai
Hongjun Cai
BLBingrun Liu
Bingrun Liu
XZXiaobo Zhong
Xiaobo Zhong
QWQianxue Wang
Qianxue Wang
The emergence and wide spread of multi-drug resistant Staphylococcus aureus (S. aureus) requires the development of new therapeutic agents with alternative modes of action. Anti-virulence strategies are hoped to meet that need. Sortase A (SrtA) has attracted great interest as a potential drug target to treat infections caused by S. aureus, as many of the surface proteins displayed by SrtA function as virulence factors by mediating bacterial adhesion to specific organ tissues, invasion of host cells, and evasion of the host-immune responses. It has been suggested that inhibitors of SrtA might be promising candidates for the treatment and/or prevention of S. aureus infections. In this study, we report that Chlorogenic acid (CHA), a natural compound that lacks significant anti–S. aureus activity, inhibit the activity of SrtA in vitro (IC50=33.86±5.55μg/ml) and the binding of S. aureus to fibrinogen (Fg). Using molecular dynamics simulations and mutagenesis assays, we further demonstrate that CHA binds to the binding sites of C184 and G192 in the SrtA. In vivo studies demonstrated that CHA prevent mice from S. aureus-induced renal abscess, resulting in a significant survival advantage. These findings indicate that CHA is a promising therapeutic compound against SrtA during S. aureus infections.

17 January 2013 in PLOS Computational Biology
Verified
Journal Article
Open access
PDF file
JDJing Dong
Jing Dong
JQJiazhang Qiu
Jiazhang Qiu
YZYu Zhang
Yu Zhang
CLChongjian Lu
Chongjian Lu
XDXiaohan Dai
Xiaohan Dai
XDXuming Deng
Xuming Deng
Alpha-hemolysin (α-HL) is a self-assembling, channel-forming toxin produced by most Staphylococcus aureus strains as a 33.2-kDa soluble monomer. Upon binding to a susceptible cell membrane, the monomer self-assembles to form a 232.4-kDa heptamer that ultimately causes host cell lysis and death. Consequently, α-HL plays a significant role in the pathogenesis of S. aureus infections, such as pneumonia, mastitis, keratitis and arthritis. In this paper, experimental studies show that oroxylin A (ORO), a natural compound without anti-S. aureus activity, can inhibit the hemolytic activity of α-HL. Molecular dynamics simulations, free energy calculations, and mutagenesis assays were performed to understand the formation of the α-HL-ORO complex. This combined approach revealed that the catalytic mechanism of inhibition involves the direct binding of ORO to α-HL, which blocks the conformational transition of the critical “Loop” region of the α-HL protein thereby inhibiting its hemolytic activity. This mechanism was confirmed by experimental data obtained from a deoxycholate-induced oligomerization assay. It was also found that, in a co-culture system with S. aureus and human alveolar epithelial (A549) cells, ORO could protect against α-HL-mediated injury. These findings indicate that ORO hinders the lytic activity of α-HL through a novel mechanism, which should facilitate the design of new and more effective antibacterial agents against S. aureus. The mechanism controlling protein-ligand interactions is one of the most important processes in rational drug design. X-ray crystallography is a traditional tool used to investigate the interaction of ligands and proteins in a complex. However, protein crystallography is inefficient, and the development of crystal technology and research remains unequally distributed. Thus, it seems impractical to explore the structure of the α-hemolysin-ORO monomer complex by crystallography. Therefore, we used molecular dynamics simulations to investigate the receptor-ligand interaction in the α-HL-ORO monomer complex. In this study, we found that oroxylin A (ORO), a natural compound with little anti-S. aureus activity, can inhibit the hemolytic activity of α-HL at low concentrations. Through molecular docking and molecular dynamics simulations, we determined the potential binding mode of the protein-ligand interaction. The data revealed that ORO directly binds to α-HL, an interaction that blacks the conformational transition of the critical “Loop” region in α-HL and thus prevents the formation of the α-HL heptameric transmembrane pore, which ultimately inhibits the hemolytic activity of α-HL. This mechanism was confirmed by experimental data. Furthermore, we demonstrated that ORO could protect against α-HL-mediated injury in human alveolar epithelial (A549) cells.