Marie Y. Davis

Dr. Marie Y. Davis

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 December 2021 in Frontiers in Molecular Neuroscience
Verified
Journal Article
Open access
RERaja Elizabeth Estes
Raja Elizabeth Estes
BLBernice Lin
Bernice Lin
AKArnav Khera
Arnav Khera
MDMarie Y. Davis
Marie Y. Davis
Many neurodegenerative diseases are characterized by abnormal protein aggregates, including the two most common neurodegenerative diseases Alzheimer’s disease (AD) and Parkinson’s disease (PD). In the global search to prevent and treat diseases, most research has been focused on the early stages of the diseases, including how these pathogenic protein aggregates are initially formed. We argue, however, that an equally important aspect of disease etiology is the characteristic spread of protein aggregates throughout the nervous system, a key process in disease progression. Growing evidence suggests that both alterations in lipid metabolism and dysregulation of extracellular vesicles (EVs) accelerate the spread of protein aggregation and progression of neurodegeneration, both in neurons and potentially in surrounding glia. We will review how these two pathways are intertwined and accelerate the progression of AD and PD. Understanding how lipid metabolism, EV biogenesis, and EV uptake regulate the spread of pathogenic protein aggregation could reveal novel therapeutic targets to slow or halt neurodegenerative disease progression.

4 February 2021 in PLOS Genetics
Verified
Journal Article
Open access
PDF file
KJKathryn A. Jewett
Kathryn A. Jewett
RTRuth E. Thomas
Ruth E. Thomas
CPChi Q. Phan
Chi Q. Phan
BLBernice Lin
Bernice Lin
GMGillian Milstein
Gillian Milstein
MDMarie Y. Davis
Marie Y. Davis
Abnormal protein aggregation within neurons is a key pathologic feature of Parkinson’s disease (PD). The spread of brain protein aggregates is associated with clinical disease progression, but how this occurs remains unclear. Mutations in glucosidase, beta acid 1 (GBA), which encodes glucocerebrosidase (GCase), are the most penetrant common genetic risk factor for PD and dementia with Lewy bodies and associate with faster disease progression. To explore how GBA mutations influence pathogenesis, we previously created a Drosophila model of GBA deficiency (Gba1b) that manifests neurodegeneration and accelerated protein aggregation. Proteomic analysis of Gba1b mutants revealed dysregulation of proteins involved in extracellular vesicle (EV) biology, and we found altered protein composition of EVs from Gba1b mutants. Accordingly, we hypothesized that GBA may influence pathogenic protein aggregate spread via EVs. We found that accumulation of ubiquitinated proteins and Ref(2)P, Drosophila homologue of mammalian p62, were reduced in muscle and brain tissue of Gba1b flies by ectopic expression of wildtype GCase in muscle. Neuronal GCase expression also rescued protein aggregation both cell-autonomously in brain and non-cell-autonomously in muscle. Muscle-specific GBA expression reduced the elevated levels of EV-intrinsic proteins and Ref(2)P found in EVs from Gba1b flies. Perturbing EV biogenesis through neutral sphingomyelinase (nSMase), an enzyme important for EV release and ceramide metabolism, enhanced protein aggregation when knocked down in muscle, but did not modify Gba1b mutant protein aggregation when knocked down in neurons. Lipidomic analysis of nSMase knockdown on ceramide and glucosylceramide levels suggested that Gba1b mutant protein aggregation may depend on relative depletion of specific ceramide species often enriched in EVs. Finally, we identified ectopically expressed GCase within isolated EVs. Together, our findings suggest that GCase deficiency promotes accelerated protein aggregate spread between cells and tissues via dysregulated EVs, and EV-mediated trafficking of GCase may partially account for the reduction in aggregate spread.

22 March 2022 in Metabolites
Verified
Journal Article
Open access
PDF file
NHNathan Hwangbo
Nathan Hwangbo
XZXinyu Zhang
Xinyu Zhang
DRDaniel Raftery
Daniel Raftery
Haiwei GuHaiwei Gu
Haiwei Gu
SHShu-Ching Hu
Shu-Ching Hu
AFAlexander Franks
Alexander Franks
In recent years, metabolomics has been used as a powerful tool to better understand the physiology of neurodegenerative diseases and identify potential biomarkers for progression. We used targeted and untargeted aqueous, and lipidomic profiles of the metabolome from human cerebrospinal fluid to build multivariate predictive models distinguishing patients with Alzheimer’s disease (AD), Parkinson’s disease (PD), and healthy age-matched controls. We emphasize several statistical challenges associated with metabolomic studies where the number of measured metabolites far exceeds sample size. We found strong separation in the metabolome between PD and controls, as well as between PD and AD, with weaker separation between AD and controls. Consistent with existing literature, we found alanine, kynurenine, tryptophan, and serine to be associated with PD classification against controls, while alanine, creatine, and long chain ceramides were associated with AD classification against controls. We conducted a univariate pathway analysis of untargeted and targeted metabolite profiles and find that vitamin E and urea cycle metabolism pathways are associated with PD, while the aspartate/asparagine and c21-steroid hormone biosynthesis pathways are associated with AD. We also found that the amount of metabolite missingness varied by phenotype, highlighting the importance of examining missing data in future metabolomic studies.

24 February 2018 in Journal of Huntington's Disease
Verified
Journal Article
Closed access
PDF file
DTDebby W. Tsuang
Debby W. Tsuang
TGTiffany A. Greenwood
Tiffany A. Greenwood
SJSuman Jayadev
Suman Jayadev
MDMarie Y. Davis
Marie Y. Davis
ASAndrew Shutes-David
Andrew Shutes-David
TBThomas D. Bird
Thomas D. Bird
Background: Psychotic symptoms of delusions and hallucinations occur in about 5% of persons with Huntington’s disease (HD). The mechanisms underlying these occurrences are unknown, but the same symptoms also occur in schizophrenia, and thus genetic r

1 December 2013 in Journal of the Neurological Sciences
Verified
Journal Article
Open access
MDMarie Y. Davis
Marie Y. Davis
CKC. Dirk Keene
C. Dirk Keene
PSPhillip D. Swanson
Phillip D. Swanson
CSConor Sheehy
Conor Sheehy
TBThomas D. Bird
Thomas D. Bird
Ataxia telangiectasia (AT) and ataxia oculomotor apraxia type 2 (AOA2) are autosomal recessive ataxias caused by mutations in genes involved in maintaining DNA integrity. Lifespan in AT is greatly shortened (20s-30s) due to increased susceptibility to malignancies (leukemia/lymphoma). Lifespan in AOA2 is uncertain. We describe a woman with variant AT with two novel mutations in ATM (IVS14+2T>G and 5825C>T, p.A1942V) who died at age 48 with pancreatic adenocarcinoma. Her mutations are associated with an unusually long life for AT and with a cancer rarely associated with that disease. We also describe two siblings with AOA2, heterozygous for two novel mutations in senataxin (3 bp deletion c.343-345 and 1398T>G, p.I466M) who have survived into their 70s, allowing us to characterize the longitudinal course of AOA2. In contrast to AT, we show that persons with AOA2 can experience a prolonged lifespan with considerable motor disability.

29 February 2024 in Movement Disorders Clinical Practice
Verified
Journal Article
Closed access
RLRuo‐Yah Lai
Ruo‐Yah Lai
CRChristian Rummey
Christian Rummey
CAChristian J. Amlang
Christian J. Amlang
CLChi‐Ying R. Lin
Chi‐Ying R. Lin
TCTiffany X. Chen
Tiffany X. Chen
SKSheng‐Han Kuo
Sheng‐Han Kuo