Yingyun Yang

Dr. Yingyun Yang


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 March 2023 in BioData Mining
Verified
Journal Article
Open access
PDF file
MWMengying Wang
Mengying Wang
CLCuixia Lee
Cuixia Lee
ZWZhenhao Wei
Zhenhao Wei
HJHong Ji
Hong Ji
YYYingyun Yang
Yingyun Yang
CYCheng Yang
Cheng Yang
Tuberculosis is a dangerous infectious disease with the largest number of reported cases in China every year. Preventing missed diagnosis has an important impact on the prevention, treatment, and recovery of tuberculosis. The earliest pulmonary tuberculosis prediction models mainly used traditional image data combined with neural network models. However, a single data source tends to miss important information, such as primary symptoms and laboratory test results, that is available in multi-source data like medical records and tests. In this study, we propose a multi-stream integrated pulmonary tuberculosis diagnosis model based on structured and unstructured multi-source data from electronic health records. With the limited number of lung specialists and the high prevalence of tuberculosis, the application of this auxiliary diagnosis model can make substantial contributions to clinical settings. The subjects were patients at the respiratory department and infectious cases department of a large comprehensive hospital in China between 2015 to 2020. A total of 95,294 medical records were selected through a quality control process. Each record contains structured and unstructured data. First, numerical expressions of features for structured data were created. Then, feature engineering was performed through decision tree model, random forest, and GBDT. Features were included in the feature exclusion set as per their weights in descending order. When the importance of the set was higher than 0.7, this process was concluded. Finally, the contained features were used for model training. In addition, the unstructured free-text data was segmented at the character level and input into the model after indexing. Tuberculosis prediction was conducted through a multi-stream integration tuberculosis diagnosis model (MSI-PTDM), and the evaluation indices of accuracy, AUC, sensitivity, and specificity were compared against the prediction results of XGBoost, Text-CNN, Random Forest, SVM, and so on. Through a variety of characteristic engineering methods, 20 characteristic factors, such as main complaint hemoptysis, cough, and test erythrocyte sedimentation rate, were selected, and the influencing factors were analyzed using the Chinese diagnostic standard of pulmonary tuberculosis. The area under the curve values for MSI-PTDM, XGBoost, Text-CNN, RF, and SVM were 0.9858, 0.9571, 0.9486, 0.9428, and 0.9429, respectively. The sensitivity, specificity, and accuracy of MSI-PTDM were 93.18%, 96.96%, and 96.96%, respectively. The MSI-PTDM prediction model was installed at a doctor workstation and operated in a real clinic environment for 4 months. A total of 692,949 patients were monitored, including 484 patients with confirmed pulmonary tuberculosis. The model predicted 440 cases of pulmonary tuberculosis. The positive sample recognition rate was 90.91%, the false-positive rate was 9.09%, the negative sample recognition rate was 96.17%, and the false-negative rate was 3.83%. MSI-PTDM can process sparse data, dense data, and unstructured text data concurrently. The model adds a feature domain vector embedding the medical sparse features, and the single-valued sparse vectors are represented by multi-dimensional dense hidden vectors, which not only enhances the feature expression but also alleviates the side effects of sparsity on the model training. However, there may be information loss when features are extracted from text, and adding the processing of original unstructured text makes up for the error within the above process to a certain extent, so that the model can learn data more comprehensively and effectively. In addition, MSI-PTDM also allows interaction between features, considers the combination effect between patient features, adds more complex nonlinear calculation considerations, and improves the learning ability of the model. It has been verified using a test set and via deployment within an actual outpatient environment.

10 March 2020 in Electronics
Verified
Journal Article
Open access
PDF file
YHYan Hua
Yan Hua
YYYingyun Yang
Yingyun Yang
JDJianhe Du
Jianhe Du
Multi-modal retrieval is a challenge due to heterogeneous gap and a complex semantic relationship between different modal data. Typical research map different modalities into a common subspace with a one-to-one correspondence or similarity/dissimilarity relationship of inter-modal data, in which the distances of heterogeneous data can be compared directly; thus, inter-modal retrieval can be achieved by the nearest neighboring search. However, most of them ignore intra-modal relations and complicated semantics between multi-modal data. In this paper, we propose a deep multi-modal metric learning method with multi-scale semantic correlation to deal with the retrieval tasks between image and text modalities. A deep model with two branches is designed to nonlinearly map raw heterogeneous data into comparable representations. In contrast to binary similarity, we formulate semantic relationship with multi-scale similarity to learn fine-grained multi-modal distances. Inter-modal and intra-modal correlations constructed on multi-scale semantic similarity are incorporated to train the deep model in an end-to-end way. Experiments validate the effectiveness of our proposed method on multi-modal retrieval tasks, and our method outperforms state-of-the-art methods on NUS-WIDE, MIR Flickr, and Wikipedia datasets.

18 August 2022 in Journal of Healthcare Engineering
Verified
Journal Article
Open access
PDF file
MWMengying Wang
Mengying Wang
CLCuixia Lee
Cuixia Lee
WWWei Wang
Wei Wang
YYYingyun Yang
Yingyun Yang
CYCheng Yang
Cheng Yang
Objective. Infectious diseases usually spread rapidly. This study aims to develop a model that can provide fine-grained early warnings of infectious diseases using real hospital data combined with disease transmission characteristics, weather, and other multi-source data. Methods. Based on daily data reported for infectious diseases collected from several large general hospitals in China between 2012 and 2020, seven common infectious diseases in medical institutions were screened and a multi self-regression deep (MSRD) neural network was constructed. Using a recurrent neural network as the basic structure, the model can effectively model the epidemiological trend of infectious diseases by considering the current influencing conditions while taking into account the historical development characteristics in time-series data. The fitting and prediction accuracy of the model were evaluated using mean absolute error (MAE) and root mean squared error. Results. The proposed approach is significantly better than the existing infectious disease dynamics model, susceptible-exposed-infected-removed (SEIR), as it addresses the concerns of difficult-to-obtain quantitative data such as latent population, overfitting of long time series, and considering only a single series of the number of sick people without considering the epidemiological characteristics of infectious diseases. We also compare certain machine learning methods in this study. Experimental results demonstrate that the proposed approach achieves an MAE of 0.6928 and 1.3782 for hand, foot, and mouth disease and influenza, respectively. Conclusion. The MRSD-based infectious disease prediction model proposed in this paper can provide daily and instantaneous updates and accurate predictions for epidemic trends.

7 June 2022 in Electronics
Verified
Journal Article
Open access
PDF file
Yan HuaYan Hua
Yan Hua
LYLin Yang
Lin Yang
YYYingyun Yang
Yingyun Yang
Deep learning-based methods have made remarkable progress for stereo matching in terms of accuracy. However, two issues still hinder producing a perfect disparity map: (1) blurred boundaries and the discontinuous disparity of a continuous region on disparity estimation maps, and (2) a lack of effective means to restore resolution precisely. In this paper, we propose to utilize multiple frequency inputs and an attention mechanism to construct the deep stereo matching model. Specifically, high-frequency and low-frequency information of the input image together with the RGB image are fed into a feature extraction network with 2D convolutions. It is conducive to produce a distinct boundary and continuous disparity of the smooth region on disparity maps. To regularize the 4D cost volume for disparity regression, we propose a 3D context-guided attention module for stacked hourglass networks, where high-level cost volumes as context guide low-level features to obtain high-resolution yet precise feature maps. The proposed approach achieves competitive performance on SceneFlow and KITTI 2015 datasets.