Jan Havlin

Dr. Jan Havlin


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 November 2021 in American Journal of Transplantation
Verified
Journal Article
Open access
PDF file
MPMichael D. Parkes
Michael D. Parkes
KHKieran M Halloran
Kieran M Halloran
AHAlim Hirji
Alim Hirji
SPShane Pon
Shane Pon
JWJustin Weinkauf
Justin Weinkauf
PHPhilip F. Halloran
Philip F. Halloran
Transplanted lungs suffer worse outcomes than other organ transplants with many developing chronic lung allograft dysfunction (CLAD), diagnosed by physiologic changes. Histology of transbronchial biopsies (TBB) yields little insight, and the molecular basis of CLAD is not defined. We hypothesized that gene expression in TBBs would reveal the nature of CLAD and distinguish CLAD from changes due simply to time posttransplant. Whole-genome mRNA profiling was performed with microarrays in 498 prospectively collected TBBs from the INTERLUNG study, 90 diagnosed as CLAD. Time was associated with increased expression of inflammation genes e.g. CD1E and immunoglobulins. After correcting for time, CLAD manifested not as inflammation but as parenchymal response-to-wounding, with increased expression of genes such as HIF1A, SERPINE2, and IGF1 that are increased in many injury and disease states and cancers, associated with development, angiogenesis, and epithelial response-to-wounding in pathway analysis. Fibrillar collagen genes were increased in CLAD, indicating matrix changes, and normal transcripts were decreased – dedifferentiation. Gene-based classifiers predicted CLAD with AUC 0.70 (no time-correction) and 0.87 (time-corrected). CLAD related gene sets and classifiers were strongly prognostic for graft failure and correlated with CLAD stage. Thus, in TBBs molecular changes indicate that CLAD primarily reflects severe parenchymal injury-induced changes and dedifferentiation.

27 August 2022 in The Journal of Heart and Lung Transplantation
Verified
Journal Article
Closed access
KHKieran Halloran
Kieran Halloran
MMMartina Mackova
Martina Mackova
MPMichael D Parkes
Michael D Parkes
AHAlim Hirji
Alim Hirji
JWJustin Weinkauf
Justin Weinkauf
PHPhilip F Halloran
Philip F Halloran

1 April 2025 in American Journal of Transplantation
Verified
Journal Article
Closed access
JHJan Havlin
Jan Havlin
ASAneta Skotnicova
Aneta Skotnicova
EDEliska Dvorackova
Eliska Dvorackova
NPNino Palavandishvili
Nino Palavandishvili
JSJitka Smetanova
Jitka Smetanova
TKTomas Kalina
Tomas Kalina

1 May 2017 in American Journal of Kidney Diseases
Verified
Journal Article
Closed access
PDF file
JHJan Havlin
Jan Havlin
KMKarel Matousovic
Karel Matousovic
OSOtto Schück
Otto Schück

10 January 2024 in The Journal of Heart and Lung Transplantation
Verified
Journal Article
Open access
RRRayoun Ramendra
Rayoun Ramendra
ADAllen Duong
Allen Duong
CZChen Yang Kevin Zhang
Chen Yang Kevin Zhang
EHElla Huszti
Ella Huszti
XZXuanzi Zhou
Xuanzi Zhou
TMTereza Martinu
Tereza Martinu
Aspiration is a known risk-factor for adverse outcomes post-lung transplantation. Airway bile acids are the gold-standard biomarker of aspiration - however they are released into the duodenum and likely reflect concurrent gastrointestinal dysmotility. Previous studies investigating total airway pepsin have found conflicting results on its relationship with adverse outcomes post-lung transplantation. These studies measured total pepsin and pepsinogen in the airways. Certain pepsinogens are constitutively expressed in the lungs while others, like pepsinogen A4 (PGA4), are not. We sought to evaluate the utility of measuring airway PGA4 as a biomarker of aspiration and predictor of adverse outcomes in lung transplant recipients (LTRs) early post-transplant. Expression of PGA4 was compared to other pepsinogens in lung tissue. Total pepsin and PGA4 were measured in large airway bronchial washings and compared to pre-existing markers of aspiration. Two independent cohorts of LTRs were used to assess the relationship between airway PGA4 and chronic lung allograft dysfunction (CLAD). Changes to airway PGA4 after anti-reflux surgery was assessed in a third cohort of LTRs. PGA4 was expressed in healthy human stomach but not lung. Airway PGA4, but not total pepsin, was associated with aspiration. Airway PGA4 was associated with an increased risk of CLAD in two independent cohorts of LTRs. Anti-reflux surgery was associated with reduced airway PGA4. Airway PGA4 is a marker of aspiration that predicts CLAD in LTRs. Measuring PGA4 at surveillance bronchoscopies can help triage high-risk LTRs for anti-reflux surgery.

13 February 2022 in Pharmaceutics
Verified
Journal Article
Open access
PDF file
EDEliška Dvořáčková
Eliška Dvořáčková
MŠMartin Šíma
Martin Šíma
JPJakub Petrus
Jakub Petrus
EKEva Klapková
Eva Klapková
PHPetr Hubáček
Petr Hubáček
Ondřej SlanařOndřej Slanař
Ondřej Slanař
The aim of this prospective study was to evaluate the pharmacokinetics of ganciclovir in lung transplant recipients, to explore its covariates, and to propose an individualized dosing regimen. Ganciclovir was administered according to the protocol in a standardized intravenous dose of 5 mg/kg twice daily. Serum ganciclovir concentrations were monitored as a trough and at 3 and 5 h after dosing. Individual ganciclovir pharmacokinetic parameters were calculated in a two-compartmental pharmacokinetic model, while regression models were used to explore the covariates. Optimal loading and maintenance doses were calculated for each patient. In lung transplant recipients (n = 40), the median (IQR) ganciclovir total volume of distribution and clearance values were 0.65 (0.52–0.73) L/kg and 0.088 (0.059–0.118) L/h/kg, respectively. We observed medium-to-high inter-individual but negligible intra-individual variability in ganciclovir pharmacokinetics. The volume of distribution of ganciclovir was best predicted by height, while clearance was predicted by glomerular filtration rate. Bodyweight-normalized clearance was significantly higher in patients with cystic fibrosis, while distribution half-life was reduced in this subgroup. On the basis of the observed relationships, practical nomograms for individualized ganciclovir dosing were proposed. The dosing of ganciclovir in patients with cystic fibrosis requires special caution, as their daily maintenance dose should be increased by approximately 50%.