Caryophyllaceae is a principally holarctic family including around 2200 species often classified into the three subfamilies Alsinoideae, Caryophylloideae, and Paronychioideae. Complex and possibly homoplasious morphological characters within the family make taxa difficult to delimit and diagnose. To explore part of the morphological evolution within the family, we investigated the phylogeny of the Caryophyllaceae by means of analyzing plastid and nuclear sequence data with parsimony and Bayesian methods. We describe a mode of tracing a stable phylogenetic signal in ITS sequences, and a significant common signal is shared with the plastid data. Parsimony and Bayesian analyses yield some differences in tree resolution. None of the subfamilies appear monophyletic, but the monophyly of the Caryophylloideae is not contradicted. Alsinoideae are paraphyletic, with Arenaria subg. Eremogone and Minuartia subg. Spergella more closely related to the Caryophylloideae. There is strong support for the inclusion of Spergula‐Spergularia in an Alsinoideae‐Caryophylloideae clade. Putative synapomorphies for these groupings are twice as many stamens as number of sepals and a caryophyllad‐type of embryogeny. Paronychioideae form a basal grade, where tribe Corrigioleae are sister to the rest of the family. Free styles and capsules with simple teeth are possibly plesiomorphic for the family.

Recent studies highlighted the role of Pleistocene climatic cycles in polyploid speciation and of southern Alpine refugia as reservoirs of diversity during glacial maxima. The polyploid Primula marginata, endemic to the southwestern Alps, includes both hexaploid and dodecaploid cytotypes that show no ecological or morphological differences. We used flow cytometry to determine variation and geographic distribution of cytotypes within and between populations and analyses of chloroplast (cp) and nuclear ribosomal (nr) DNA sequences from the Internal Transcribed Spacer (ITS) region to infer the evolutionary history of the two cytotypes and the auto- vs. allopolyploid origin of dodecaploid populations.

Climate change seriously threatens biodiversity, particularly in mountain ecosystems. However, studies on climate change effects rarely consider endemic species and their niche properties. Using species distribution models, we assessed the impact of climate change on the endemic flora of the richest centre of endemism in the Alps: the South-Western Alps. We projected the potential distributions of 100 taxa under both an optimistic (RCP2.6) and a pessimistic (RCP8.5) climate scenario, analysing the relationships between range dynamics and several predictors (dispersal abilities, vegetation belts, niche marginality, niche breadth, altitudinal range and present range). The negative impact ranged from weak to severe according to the scenario, but the extinction risk was low. The dispersal abilities of species strongly affected these range dynamics. Colline and subalpine species were the most threatened and the relationship between range dynamics and predictors varied among vegetation belts. Our results suggest that the rough topography of the SW Alps will probably buffer the climate change effects on endemics, especially if climate will remain within the limits already experienced by species during the Holocene. The presence of the Mediterranean-mountain flora, less affected by climate change than the alpine one, may explain the lower number of species threatened by extinction in the SW Alps than in other European mountains. These results suggest that the relationship between plants’ sensitivity to climate change, and both niche properties and vegetation belts, depends on the difference between the current climate in which species grow and the future climate, and not just on their niche breadth.