Jingyun Shi

Jingyun Shi


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 February 2018 in European Radiology
Verified
Journal Article
Closed access
PDF file
XZXinzhong Zhu
Xinzhong Zhu
DDDi Dong
Di Dong
ZCZhendong Chen
Zhendong Chen
MFMengjie Fang
Mengjie Fang
LZLiwen Zhang
Liwen Zhang
JTJie Tian
Jie Tian

25 January 2022 in OncoImmunology
Verified
Journal Article
Open access
JGJing Gong
Jing Gong
XBXiao Bao
Xiao Bao
TWTing Wang
Ting Wang
JLJiyu Liu
Jiyu Liu
WPWeijun Peng
Weijun Peng
YGYajia Gu
Yajia Gu
To develop a short-term follow-up CT-based radiomics approach to predict response to immunotherapy in advanced non-small-cell lung cancer (NSCLC) and investigate the prognostic value of radiomics features in predicting progression-free survival (PFS) and overall survival (OS). We first retrospectively collected 224 advanced NSCLC patients from two centers, and divided them into a primary cohort and two validation cohorts respectively. Then, we processed CT scans with a series of image preprocessing techniques namely, tumor segmentation, image resampling, feature extraction and normalization. To select the optimal features, we applied the feature ranking with recursive feature elimination method. After resampling the training dataset with a synthetic minority oversampling technique, we applied the support vector machine classifier to build a machine-learning-based classification model to predict response to immunotherapy. Finally, we used Kaplan-Meier (KM) survival analysis method to evaluate prognostic value of rad-score generated by CT-radiomics model. In two validation cohorts, the delta-radiomics model significantly improved the area under receiver operating characteristic curve from 0.64 and 0.52 to 0.82 and 0.87, respectively (P < .05). In sub-group analysis, pre- and delta-radiomics model yielded higher performance for adenocarcinoma (ADC) patients than squamous cell carcinoma (SCC) patients. Through the KM survival analysis, the rad-score of delta-radiomics model had a significant prognostic for PFS and OS in validation cohorts (P < .05). Our results demonstrated that (1) delta-radiomics model could improve the prediction performance, (2) radiomics model performed better on ADC patients than SCC patients, (3) delta-radiomics model had prognostic values in predicting PFS and OS of NSCLC patients.

1 September 2019 in Lung Cancer
Verified
Journal Article
Closed access
YSYingran Shen
Yingran Shen
XXXinnan Xu
Xinnan Xu
YZYunfei Zhang
Yunfei Zhang
WLWeitong Li
Weitong Li
JDJie Dai
Jie Dai
GJGening Jiang
Gening Jiang

1 June 2017 in Lung Cancer
Verified
Journal Article
Closed access
YLYinan Liu
Yinan Liu
HSHui Sun
Hui Sun
FZFei Zhou
Fei Zhou
CSChunxia Su
Chunxia Su
GGGuanghui Gao
Guanghui Gao
JSJingyun Shi
Jingyun Shi

18 February 2020 in Frontiers in Oncology
Verified
Journal Article
Open access
HLHailin Li
Hailin Li
RZRui Zhang
Rui Zhang
SWSiwen Wang
Siwen Wang
MFMengjie Fang
Mengjie Fang
YZYongbei Zhu
Yongbei Zhu
JTJie Tian
Jie Tian
Objectives: To identify a computed tomography (CT)-based radiomic signature for predicting progression-free survival (PFS) in stage IV anaplastic lymphoma kinase (ALK)-positive non-small-cell lung cancer (NSCLC) patients treated with tyrosine kinase inhibitor (TKI) crizotinib. Materials and Methods: This retrospective proof-of-concept study included a cohort of 63 stage IV ALK-positive NSCLC patients who had received TKI crizotinib therapy for model construction and validation. Another independent cohort including 105 stage IV EGFR-positive NSCLC patients was also used for external validation in EGFR-TKI treatment. We initially extracted 481 quantitative three-dimensional features derived from manually segmented tumor volumes of interest. Pearson correlation analysis along with the least absolute shrinkage and selection operator (LASSO) penalized Cox proportional hazards regression was successively performed to select critical radiomic features. A CT-based radiomic signature for PFS prediction was obtained using multivariate Cox regression. The performance evaluation of the radiomic signature was conducted using concordance index (C-index), time-dependent receiver operating characteristic (ROC) analysis, and Kaplan-Meier survival analysis. Results: A radiomic signature containing 3 features showed significant prognostic performance for ALK-positive NSCLC patients in both the training cohort (C-index, 0.744; time-dependent AUC, 0.895) and validation cohort (C-index, 0.717; time-dependent AUC, 0.824). The radiomic signature could significantly risk stratify ALK-positive NSCLC patients (hazard ratio, 2.181; P < 0.001) and outperformed other prognostic factors. However, no significant association with PFS was captured for the radiomic signature in EGFR-positive NSCLC cohort (log-rank tests, P = 0.41). Conclusions: The CT-based radiomic features can capture valuable information regarding the tumor phenotype. The proposed radiomic signature was found an effective prognostic factor in stage IV ALK mutated none-synchronous nodules NSCLC patients treated with TKI.

15 December 2021 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
JSJiangdian Song
Jiangdian Song
SHShih-Cheng Huang
Shih-Cheng Huang
BKBrendan Kelly
Brendan Kelly
GLGuanqun Liao
Guanqun Liao
JSJingyun Shi
Jingyun Shi
KYKristen W. Yeom
Kristen W. Yeom
Automatic segmentation of lung nodules on computed tomography (CT) images is challenging owing to the variability of morphology, location, and intensity. In addition, few segmentation methods can capture intra-nodular heterogeneity to assist lung nodule diagnosis. In this study, we propose an end-to-end architecture to perform fully automated segmentation of multiple types of lung nodules and generate intra-nodular heterogeneity images for clinical use. To this end, a hybrid loss is considered by introducing a Faster R-CNN model based on generalized intersection over union loss in generative adversarial network. The Lung Image Database Consortium image collection dataset, comprising 2,635 lung nodules, was combined with 3,200 lung nodules from five hospitals for this study. Compared with manual segmentation by radiologists, the proposed model obtained an average dice coefficient (DC) of 82.05% on the test dataset. Compared with U-net , NoduleNet , nnU-net , and other three models, the proposed method achieved comparable performance on lung nodule segmentation and generated more vivid and valid intra-nodular heterogeneity images, which are beneficial in radiological diagnosis. In an external test of 91 patients from another hospital, the proposed model achieved an average DC of 81.61%. The proposed method effectively addresses the challenges of inevitable human interaction and additional pre-processing procedures in the existing solutions for lung nodule segmentation. In addition, the results show that the intra-nodular heterogeneity images generated by the proposed model are suitable to facilitate lung nodule diagnosis in radiology.