The large outbreak of banana Fusarium wilt has become a bottleneck limiting the industry’s development, and crop rotation is a cost-effective and essential measure to overcome the obstacles of banana crop monoculture. The present work was carried out to explore the mechanisms of how changes in soil chemical properties and the reestablishment of soil microorganisms in high-incidence soils are affected by crop rotation and plant residue. In this study, pineapple–banana crop rotation and pineapple residue amendment were carried out to alleviate banana Fusarium wilt, and their effects on bacterial and fungal communities were analyzed using the MiSeq Illumina sequencing platform. Both pineapple–banana rotation and residue addition significantly reduced disease incidence. Moreover, pineapple rotation and residue amendment altered the bacterial and fungal community composition. The taxonomic and phylogenetic alpha diversity of bacteria and fungi significantly increased against disease suppression and nutrition competition. The relative abundances of the Burkholderia, Pseudomonas, Elaphocordyceps, Penicillium, and Talaromyces genera were higher, and the number of Fusarium was significantly lower in rotational soil than in banana monoculture soil. Finally, linear models (LM) showed that the Burkholderia and Talaromyces in crop rotation, and Aspergillus in residue amendment had a significantly negative relationship to disease incidence, which plays a key role in Fusarium reduction. To consider the economic benefits and protect the vitality of the soil, this study suggested that pineapple–banana rotation and pineapple residue amendment both could be considered for the sustainable management of banana wilt.

Banana Fusarium wilt-suppressive soils are effective against pathogen invasion, yet soil physicochemical factors responsible for conducive or suppressive behavior have not been reported. Here, we investigated the changes in banana biomass, disease incidence (DI), soil culturable microbes and physicochemical properties by incorporating pepper and banana residues into conducive and suppressive soils. Before the incorporation of any residues, the suppressive soil significantly increased banana biomass and decreased DI compared to the conducive soil. The biomass of the suppressive soil was significantly higher than that of the conducive soil after the incorporation of either pepper or banana residues. Compared with the control (CK), the incorporation of pepper residues to both soils significantly reduced DI, while banana residues had the opposite effect. Additionally, both conducive and suppressive soils supplemented with pepper residues significantly reduced the amounts of culturable Fusarium oxysporum and increased the amounts of beneficial Pseudomonas and Bacillus. The pepper residue extracts significantly inhibited the growth of F. oxysporum mycelium. Soil alkali-hydrolyzable nitrogen (AN) responded most strongly to residue application to suppressive soil. The AN factor was significantly and positively correlated with banana biomass; however, there was no direct and significant negative correlation with DI. Further analysis of the results showed that elevated AN content could stimulate the amounts of culturable Bacillus in the soil, and Bacillus antagonized the proliferation of pathogen and thus indirectly and effectively reduced banana DI. In conclusion, soil AN content can indirectly improve the disease suppression ability of pepper-residue-mediated suppressive soil by manipulating the soil microbiome.

Aims The large outbreak of banana Fusarium wilt has become a bottleneck limiting the industry’s development, and crop rotation is a cost-effective and essential measure to overcome the obstacles of banana crop monoculture. The present work was carried out to explore the mechanisms of how changes in physicochemical properties and the reestablishment of soil microorganisms in high-incidence soils are affected by crop rotation and plant residue. Methods In this study, pineapple-banana crop rotation and pineapple residue amendment were used to alleviate banana Fusarium wilt, and their effects on bacterial and fungal communities were studied using the MiSeq Illumina sequencing platform. Results Both pineapple-banana rotation and residue addition significantly reduced disease incidence. Moreover, pineapple rotation and residue amendment altered the bacterial and fungal community composition. The taxonomic and phylogenetic alpha diversity of bacteria and fungi significantly increased against disease suppression and nutrition competition. The relative abundances of the Burkholderia, Pseudomonas, Elaphocordyceps, Penicillium, and Talaromyces genera were higher, and the number of Fusarium was significantly lower in rotational soil than in banana monoculture soil. Finally, linear models (LM) was used to show that the Burkholderia and Talaromyces in crop rotation, and Aspergillus in residue amendment have significant negative relationship to disease incidence, which plays a key role in Fusarium reduction. Conclusions To consider the economic benefits and protect the vitality of the soil, this study suggested that pineapple-banana rotation and pineapple residue amendment both could be considered for the sustainable management of banana wilt.