Medical visual question answering (VQA) aims to correctly answer a clinical question related to a given medical image. Nevertheless, owing to the expensive manual annotations of medical data, the lack of labeled data limits the development of medical VQA. In this paper, we propose a simple yet effective data augmentation method, VQAMix, to mitigate the data limitation problem. Specifically, VQAMix generates more labeled training samples by linearly combining a pair of VQA samples, which can be easily embedded into any visual-language model to boost performance. However, mixing two VQA samples would construct new connections between images and questions from different samples, which will cause the answers for those new fabricated image-question pairs to be missing or meaningless. To solve the missing answer problem, we first develop the Learning with Missing Labels (LML) strategy, which roughly excludes the missing answers. To alleviate the meaningless answer issue, we design the Learning with Conditional-mixed Labels (LCL) strategy, which further utilizes language-type prior to forcing the mixed pairs to have reasonable answers that belong to the same category. Experimental results on the VQA-RAD and PathVQA benchmarks show that our proposed method significantly improves the performance of the baseline by about 7% and 5% on the averaging result of two backbones, respectively. More importantly, VQAMix could improve confidence calibration and model interpretability, which is significant for medical VQA models in practical applications. All code and models are available at https://github.com/haifangong/VQAMix .
9 August 2021 in IEEE Transactions on Neural Networks and Learning Systems
Medical imaging technologies, including computed tomography (CT) or chest X-Ray (CXR), are largely employed to facilitate the diagnosis of the COVID-19. Since manual report writing is usually too time-consuming, a more intelligent auxiliary medical system that could generate medical reports automatically and immediately is urgently needed. In this article, we propose to use the medical visual language BERT (Medical-VLBERT) model to identify the abnormality on the COVID-19 scans and generate the medical report automatically based on the detected lesion regions. To produce more accurate medical reports and minimize the visual-and-linguistic differences, this model adopts an alternate learning strategy with two procedures that are knowledge pretraining and transferring. To be more precise, the knowledge pretraining procedure is to memorize the knowledge from medical texts, while the transferring procedure is to utilize the acquired knowledge for professional medical sentences generations through observations of medical images. In practice, for automatic medical report generation on the COVID-19 cases, we constructed a dataset of 368 medical findings in Chinese and 1104 chest CT scans from The First Affiliated Hospital of Jinan University, Guangzhou, China, and The Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, China. Besides, to alleviate the insufficiency of the COVID-19 training samples, our model was first trained on the large-scale Chinese CX-CHR dataset and then transferred to the COVID-19 CT dataset for further fine-tuning. The experimental results showed that Medical-VLBERT achieved state-of-the-art performances on terminology prediction and report generation with the Chinese COVID-19 CT dataset and the CX-CHR dataset. The Chinese COVID-19 CT dataset is available at https://covid19ct.github.io/.
27 May 2022 in Journal of Chemical Information and Modeling