Yoshimi Miki

Dr. Yoshimi Miki

Tokushima University, Tokushima, Japan
+1
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 September 2019 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
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AMAkio Mori
Akio Mori
THTaku Hatano
Taku Hatano
TITsuyoshi Inoshita
Tsuyoshi Inoshita
KSKahori Shiba-Fukushima
Kahori Shiba-Fukushima
TKTakahiro Koinuma
Takahiro Koinuma
NHNobutaka Hattori
Nobutaka Hattori
Significance: The mechanisms of α-synuclein aggregation and subsequent Lewy body formation are a key pathogenesis of Parkinson’s disease (PD). PARK14 -linked PD, which is caused by mutations of the iPLA2-VIA/PLA2G6 gene, exhibits a marked Lewy body pathology. iPLA2-VIA , which belongs to the phospholipase A 2 family, is another causative gene of neurodegeneration with brain iron accumulation (NBIA). Here, we demonstrate that iPLA2-VIA loss results in acyl-chain shortening in phospholipids, which affects ER homeostasis and neurotransmission and promotes α-synuclein aggregation. The administration of linoleic acid or the overexpression of C19orf12, one of the NBIA-causative genes, also suppresses the acyl-chain shortening by iPLA2-VIA loss. The rescue of iPLA2-VIA phenotypes by C19orf12 provides significant molecular insight into the underlying common pathogenesis of PD and NBIA.

1 April 2020 in Asia Pacific Allergy
Verified
Journal Article
Open access
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YSYutaka Sano
Yutaka Sano
STShota Toyoshima
Shota Toyoshima
YMYoshimi Miki
Yoshimi Miki
YTYoshitaka Taketomi
Yoshitaka Taketomi
MIMana Ito
Mana Ito
Yoshimichi OkayamaYoshimichi Okayama
Yoshimichi Okayama
Sano Y, et al. Asia Pac Allergy. 2020 Apr;10(2):e21. https://doi.org/10.5415/apallergy.2020.10.e21

25 January 2022 in JCI Insight
Verified
Journal Article
Open access
PDF file
YMYoshimi Miki
Yoshimi Miki
YTYoshitaka Taketomi
Yoshitaka Taketomi
YKYuh Kidoguchi
Yuh Kidoguchi
JJJyyyt Jjjj
Jyyyt Jjjj
KMKazuaki Muramatsu
Kazuaki Muramatsu
MMMakoto Murakami
Makoto Murakami
Besides promoting inflammation by mobilizing lipid mediators, group IIA secreted phospholipase A 2 (sPLA 2 -IIA) prevents bacterial infection by degrading bacterial membranes. Here, we show that, despite the restricted intestinal expression of sPLA 2 -IIA in BALB/c mice, its genetic deletion leads to amelioration of cancer and exacerbation of psoriasis in distal skin. Intestinal expression of sPLA 2 -IIA is reduced after treatment with antibiotics or under germ-free conditions, suggesting its upregulation by gut microbiota. Metagenome, transcriptome, and metabolome analyses have revealed that sPLA 2 -IIA deficiency alters the gut microbiota, accompanied by notable changes in the intestinal expression of genes related to immunity and metabolism, as well as in the levels of various blood metabolites and fecal bacterial lipids, suggesting that sPLA 2 -IIA contributes to shaping of the gut microbiota. The skin phenotypes in Pla2g2a –/– mice are lost (a) when they are cohoused with littermate WT mice, resulting in the mixing of the microbiota between the genotypes, or (b) when they are housed in a more stringent pathogen-free facility, where Pla2g2a expression in WT mice is low and the gut microbial compositions in both genotypes are nearly identical. Thus, our results highlight a potentially new aspect of sPLA 2 -IIA as a modulator of gut microbiota, perturbation of which affects distal skin responses.

30 January 2023 in Cell Reports
Verified
Journal Article
Open access
THTetsuya Hirabayashi
Tetsuya Hirabayashi
MKMai Kawaguchi
Mai Kawaguchi
SHSayaka Harada
Sayaka Harada
MMMisa Mouri
Misa Mouri
RTRina Takamiya
Rina Takamiya
MMMakoto Murakami
Makoto Murakami
Choline supplies methyl groups for regeneration of methionine and the methyl donor S-adenosylmethionine in the liver. Here, we report that the catabolism of membrane phosphatidylcholine (PC) into water-soluble glycerophosphocholine (GPC) by the phospholipase/lysophospholipase PNPLA8-PNPLA7 axis enables endogenous choline stored in hepatic PC to be utilized in methyl metabolism. PNPLA7-deficient mice show marked decreases in hepatic GPC, choline, and several metabolites related to the methionine cycle, accompanied by various signs of methionine insufficiency, including growth retardation, hypoglycemia, hypolipidemia, increased energy consumption, reduced adiposity, increased fibroblast growth factor 21 (FGF21), and an altered histone/DNA methylation landscape. Moreover, PNPLA8-deficient mice recapitulate most of these phenotypes. In contrast to wild-type mice fed a methionine/choline-deficient diet, both knockout strains display decreased hepatic triglyceride, likely via reductions of lipogenesis and GPC-derived glycerol flux. Collectively, our findings highlight the biological importance of phospholipid catabolism driven by PNPLA8/PNPLA7 in methyl group flux and triglyceride synthesis in the liver.

14 April 2022 in Metabolites
Verified
Journal Article
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YTYoshitaka Taketomi
Yoshitaka Taketomi
YMYoshimi Miki
Yoshimi Miki
MMMakoto Murakami
Makoto Murakami
Among the phospholipase A2 (PLA2) superfamily, the secreted PLA2 (sPLA2) family contains 11 mammalian isoforms that exhibit unique tissue or cellular distributions and enzymatic properties. Current studies using sPLA2-deficient or -overexpressed mouse strains, along with mass spectrometric lipidomics to determine sPLA2-driven lipid pathways, have revealed the diverse pathophysiological roles of sPLA2s in various biological events. In general, individual sPLA2s exert their specific functions within tissue microenvironments, where they are intrinsically expressed through hydrolysis of extracellular phospholipids. Recent studies have uncovered a new aspect of group IIA sPLA2 (sPLA2-IIA), a prototypic sPLA2 with the oldest research history among the mammalian PLA2s, as a modulator of the gut microbiota. In the intestine, Paneth cell-derived sPLA2-IIA acts as an antimicrobial protein to shape the gut microbiota, thereby secondarily affecting inflammation, allergy, and cancer in proximal and distal tissues. Knockout of intestinal sPLA2-IIA in BALB/c mice leads to alterations in skin cancer, psoriasis, and anaphylaxis, while overexpression of sPLA2-IIA in Pla2g2a-null C57BL/6 mice induces systemic inflammation and exacerbates arthritis. These phenotypes are associated with notable changes in gut microbiota and fecal metabolites, are variable in different animal facilities, and are abrogated after antibiotic treatment, co-housing, or fecal transfer. These studies open a new mechanistic action of this old sPLA2 and add the sPLA2 family to the growing list of endogenous factors capable of affecting the microbe–host interaction and thereby systemic homeostasis and diseases.

1 July 2020 in Journal of Biological Chemistry
Verified
Journal Article
Open access
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KWKazuhiro Watanabe
Kazuhiro Watanabe
YTYoshitaka Taketomi
Yoshitaka Taketomi
YMYoshimi Miki
Yoshimi Miki
KKKiyotaka Kugiyama
Kiyotaka Kugiyama
MMMakoto Murakami
Makoto Murakami
Aortic dissection is a life-threatening aortopathy involving separation of the aortic wall, whose underlying mechanisms are still incompletely understood. Epidemiological evidence suggests that unsaturated fatty acids improve cardiovascular health. Here, using quantitative RT-PCR, histological analyses, magnetic cell sorting and flow cytometry assays, and MS-based lipidomics, we show that the activity of a lipid-metabolizing enzyme, secreted phospholipase A2 group V (sPLA2-V), protects against aortic dissection by endogenously mobilizing vasoprotective lipids. Global and endothelial cell–specific sPLA2-V–deficient mice frequently developed aortic dissection shortly after infusion of angiotensin II (AT-II). We observed that in the AT-II–treated aorta, endothelial sPLA2-V mobilized oleic and linoleic acids, which attenuated endoplasmic reticulum stress, increased the expression of lysyl oxidase, and thereby stabilized the extracellular matrix in the aorta. Of note, dietary supplementation with oleic or linoleic acid reversed the increased susceptibility of sPLA2-V–deficient mice to aortic dissection. These findings reveal an unexplored functional link between sPLA2-driven phospholipid metabolism and aortic stability, possibly contributing to the development of improved diagnostic and/or therapeutic strategies for preventing aortic dissection.