Sami Simsek

Prof. Dr. Sami Simsek

orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
21 January 2009 in Parasitology
Verified
Journal Article
Closed access
PDF file
USU. Saarma
U. Saarma
IJI. Jõgisalu
I. Jõgisalu
EME. Moks
E. Moks
Antonio VarcasiaAntonio Varcasia
Antonio Varcasia
ALA. Lavikainen
A. Lavikainen
Pablo MaravillaPablo Maravilla
Pablo Maravilla
SUMMARY: The taxonomic status of Echinococcus, an important zoonotic cestode genus, has remained controversial, despite numerous attempts to revise it. Although mitochondrial DNA (mtDNA) has been the source of markers of choice for reconstructing the phylogeny of the genus, results derived from mtDNA have led to significant inconsistencies with earlier species classifications based on phenotypic analysis. Here, we used nuclear DNA markers to test the phylogenic relationships of members of the genus Echinococcus. The analysis of sequence data for 5 nuclear genes revealed a significantly different phylogeny for Echinococcus from that proposed on the basis of mitochondrial DNA sequence data, but was in agreement with earlier species classifications. The most notable results from the nuclear phylogeny were (1) E. multilocularis was placed as basal taxon, (2) all genotypes of Echinococcus granulosus grouped as a monophyletic entity, and (3) genotypes G8 and G10 clustered together. We conclude that the analysis of nuclear DNA data provides a more reliable means of inferring phylogenetic relationships within Echinococcus than mtDNA and suggest that mtDNA should not be used as the sole source of markers in future studies where the goal is to reconstruct a phylogeny that does not only reflect a maternal lineage, but aims to describe the evolutionary history at species level or higher.

1 August 2017 in Infection, Genetics and Evolution
Verified
Journal Article
Closed access
LKLiina Kinkar
Liina Kinkar
TLTeivi Laurimäe
Teivi Laurimäe
MSMitra Sharbatkhori
Mitra Sharbatkhori
HMHossein Mirhendi
Hossein Mirhendi
EKEshrat Beigom Kia
Eshrat Beigom Kia
USUrmas Saarma
Urmas Saarma

1 August 2018 in International Journal for Parasitology
Verified
Journal Article
Closed access
LKLiina Kinkar
Liina Kinkar
TLTeivi Laurimäe
Teivi Laurimäe
GAGerardo Acosta-Jamett
Gerardo Acosta-Jamett
VAVanessa Andresiuk
Vanessa Andresiuk
IBIbrahim Balkaya
Ibrahim Balkaya
USUrmas Saarma
Urmas Saarma

1 October 2018 in Infection, Genetics and Evolution
Verified
Journal Article
Closed access
LKLiina Kinkar
Liina Kinkar
TLTeivi Laurimäe
Teivi Laurimäe
GAGerardo Acosta
Gerardo Acosta
VAVanessa Andresiuk
Vanessa Andresiuk
IBIbrahim Balkaya
Ibrahim Balkaya
USUrmas Saarma
Urmas Saarma

1 August 2008 in Acta Tropica
Verified
Journal Article
Closed access
AUArmagan Erdem Utuk
Armagan Erdem Utuk
SSSami Simsek
Sami Simsek
EKErgun Koroglu
Ergun Koroglu
Donald McManusDonald McManus
Donald McManus

1 January 2015 in Parasites & Vectors
Verified
Journal Article
Open access
PDF file
Münir AktaşMünir Aktaş
Münir Aktaş
SÖSezayi Özübek
Sezayi Özübek
KAKursat Altay
Kursat Altay
NINeval Duygu Sayin Ipek
Neval Duygu Sayin Ipek
IBİbRahim Balkaya
İbRahim Balkaya
NDNazir Dumanlı
Nazir Dumanlı
Canine tick-borne parasites have emerged in recent years, showing a wider geographic distribution and increased global prevalence. In addition to their veterinary importance, domestic dogs play an important role in the transmission cycles of some agents by acting as reservoirs and sentinels. This study investigated Babesia, Theileria, Anaplasma, and Ehrlichia species in asymptomatic dogs in ten provinces of Turkey. DNA obtained from blood samples collected from 757 domestic dogs (243 stray, 351 shelter, 163 pet) of both sexes and various ages were evaluated using PCR and reverse line blotting (RLB) assays. Of the 757 dogs tested, 41 (5.4%) were found to be infected with one or more parasites. Ehrlichia canis (37/757, 4.9%) was the most common canine tick-borne pathogen, followed by Anaplasma platys (4/757, 0.5%). Babesia canis and Theileria annulata were each detected in 1 (0.13%) sample. Combined infection of E. canis and A. platys was detected in 2 (0.3%) samples. The prevalence of tick-borne pathogens was higher in adult dogs (6.8%) than in those under one year old (3.1%). Difference in infection rate of male and female dogs was not significant. Pet dogs had a lower prevalence of infection (1.2%) compared to stray (7.4%) and shelter dogs (6%) although the difference between stray and shelter dogs was not significant. Babesia canis, T. annulata, A. platys, and E. canis species were identified at the molecular level in dogs in several provinces of Turkey, with E. canis being the most common species among tick-borne pathogens. Detailed studies should be conducted regarding the existence and prevalence of B. canis and Dermacentor reticulatus in eastern Turkey.