Shiheng Lyu

Dr. Shiheng Lyu


Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 February 2023 in Antioxidants
Verified
Journal Article
Open access
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CGChenxi Gao
Chenxi Gao
YSYue Sun
Yue Sun
JLJing Li
Jing Li
ZZZhe Zhou
Zhe Zhou
XDXuming Deng
Xuming Deng
ZXZhihui Xue
Zhihui Xue
There is increasing interest in the production and consumption of tea (Camellia sinensis L.) processed from purple–leaved cultivar due to their high anthocyanin content and health benefits. However, how and why seasonal changes affect anthocyanin accumulation in young tea leaves still remains obscured. In this study, anthocyanin and abscisic acid (ABA) contents in young leaves of Zifuxing 1 (ZFX1), a cultivar with new shoots turning to purple in Wuyi Mountain, a key tea production region in China, were monitored over four seasons. Young leaves produced in September were highly purplish, which was accompanied with higher anthocyanin and ABA contents. Among the environmental factors, the light intensity in particular was closely correlated with anthocyanin and ABA contents. A shade experiment also indicated that anthocyanin content significantly decreased after 168 h growth under 75% shade, but ABA treatment under the shade conditions sustained anthocyanin content. To confirm the involvement of ABA in the modulation of anthocyanin accumulation, anthocyanin, carotenoids, chlorophyll, ABA, jasmonic acid (JA), and salicylic acid (SA) in the young leaves of four cultivars, including ZFX1, Zijuan (ZJ), wherein leaves are completely purple, Rougui (RG) and Fudingdabaicha (FDDB) wherein leaves are green, were analyzed, and antioxidant activities of the leaf extracts were tested. Results showed that ABA, not other tested hormones, was significantly correlated with anthocyanin accumulation in the purple–leaved cultivars. Cultivars with higher anthocyanin contents exhibited higher antioxidant activities. Subsequently, ZFX1 plants were grown under full sun and treated with ABA and fluridone (Flu), an ABA inhibitor. ABA treatment elevated anthocyanin level but decreased chlorophyll contents. The reverse was true to those treated with Flu. To pursue a better understanding of ABA involvement in anthocyanin accumulation, RNA–Seq was used to analyze transcript differences among ABA– or Flu–treated and untreated ZFX1 plants. Results indicated that the differentially expressed genes in ABA or Flu treatment were mainly ABA signal sensing and metabolism–related genes, anthocyanin accumulation-related genes, light–responsive genes, and key regulatory MYB transcription factors. Taking all the results into account, a model for anthocyanin accumulation in ZFX1 cultivar was proposed: high light intensity caused reactive oxygen stress, which triggered the biosynthesis of ABA; ABA interactions with transcription factors, such as MYB-enhanced anthocyanin biosynthesis limited chlorophyll and carotenoid accumulation; and transport of anthocyanin to vacuoles resulting in the young leaves of ZFX1 with purplish coloration. Further research is warranted to test this model.

13 September 2022 in Foods
Verified
Journal Article
Open access
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CGChenxi Gao
Chenxi Gao
YHYan HUANG
Yan HUANG
JLJing Li
Jing Li
SLShiheng Lyu
Shiheng Lyu
Zhihui WangZhihui Wang
Zhihui Wang
WSWeijiang Sun
Weijiang Sun
Panyong Congou black tea (PCT) is one of the most representative and historically famous Congou black teas in China and has been gaining more and more attention for its beneficial health properties. Currently, four grades of PCT are available, based on the raw leaf materials and consumer palatability. The chemical profiles distinguishing different grades of PCT are yet to be defined, nor has the relationship with grade been evaluated. In the present study, chemometric analysis showed that epigallocatechin (EGC), catechin (C), polyphenols, gallic acid (GA), and free amino acids are grade related bio-markers of PCT. These compounds are associated with the sweet and mellow aftertaste of PCT. A total of 34 volatile components were identified, of which the three component types with the highest relative percentages were alcohols (51.34–52.51%), ketones (27.31–30.28%), and aldehydes (12.70–13.18%). Additionally, our results revealed that sweet floral and fruity aromas were positively correlated with six volatile organic compounds (VOCs), 1-pentanol, propyl hexanoate, linalool, cyclohexanone, hexanal, and 2,5-dimethylpyrazine. Clear discrimination was achieved using orthogonal projections to latent structures discriminant analysis (OPLS-DA). The findings provide vital information on the characteristic flavor of each grade of PCT.

12 September 2023 in Frontiers in Plant Science
Verified
Journal Article
Open access
XSXiaolin Si
Xiaolin Si
SLShiheng Lyu
Shiheng Lyu
Quaid HussainQuaid Hussain
Quaid Hussain
HYHongyu Ye
Hongyu Ye
CHChunying Huang
Chunying Huang
KWKetao Wang
Ketao Wang
Carya cathayensis, commonly referred to as Chinese hickory, produces nuts that contain high-quality edible oils, particularly oleic acid (18:1). It is known that stearoyl-ACP desaturase (SAD) is the first key step converting stearic acid (C18:0, SA) to oleic acid (C18:1, OA) in the aminolevulinic acid (ALA) biosynthetic pathway and play an important role in OA accumulation. Thus far, there is little information about SAD gene family in C. cathayensis and the role of individual members in OA accumulation. This study searched the Chinese Hickory Genome Database and identified five members of SAD genes, designated as CcSADs, at the whole genome level through the comparison with the homologous genes from Arabidopsis. RNA-Seq analysis showed that CcSSI2-1, CcSSI2-2, and CcSAD6 were highly expressed in kernels. The expression pattern of CcSADs was significantly correlated with fatty acid accumulation during the kernel development. In addition, five full-length cDNAs encoding SADs were isolated from the developing kernel of C. cathayensis. CcSADs-green fluorescent protein (GFP) fusion construct was infiltrated into tobacco epidermal cells, and results indicated their chloroplast localization. The catalytic function of these CcSADs was further analyzed by heterologous expression in Saccharomyces cerevisiae, Nicotiana benthamiana, and walnut. Functional analysis demonstrated that all CcSADs had fatty acid desaturase activity to catalyze oleic acid biosynthesis. Some members of CcSADs also have strong substrate specificity for 16:0-ACP to synthesize palmitoleic acid (C16:1, PA). Our study documented SAD gene family in C. cathayensis and the role of CcSSI2-1, CcSSI2-2, and CcSAD6 in OA accumulation, which could be important for future improvement of OA content in this species via genetic manipulation.

9 October 2022 in Genes
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Journal Article
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JYJun Yang
Jun Yang
CLCheng cheng Ling
Cheng cheng Ling
HZHuamin Zhang
Huamin Zhang
Quaid HussainQuaid Hussain
Quaid Hussain
SLShiheng Lyu
Shiheng Lyu
YLYongsheng Liu
Yongsheng Liu
Actinidiaceae, an economically important plant family, includes the Actinidia, Clematoclethra and Saurauia genus. Kiwifruit, with remarkably high vitamin C content, is an endemic species widely distributed in China with high economic value. Although many Actinidiaceae chloroplast genomes have been reported, few complete mitogenomes of Actinidiaceae have been studied. Here, complete circular mitogenomes of the four kiwifruit species and Saurauia tristyla were assembled. Codon usage, sequence repeats, RNA editing, gene transfers, selective pressure, and phylogenetic relationships in the four kiwifruit species and S. tristyla were comparatively analyzed. This research will contribute to the study of phylogenetic relationships within Actiniaceae and molecular barcoding in kiwifruit.

Verified
Journal Article
Open access
PDF file
KLKeliang Lyu
Keliang Lyu
JXjiajing xiao
jiajing xiao
SLShiheng Lyu
Shiheng Lyu
Renyi LiuRenyi Liu
Renyi Liu
Transposable elements (TEs) make up a large portion of plant genomes and play a vital role in genome structure, function, and evolution. Cultivated strawberry (Fragaria x ananassa) is one of the most important fruit crops, and its octoploid genome was formed through several rounds of genome duplications from diploid ancestors. Here, we built a pan-genome TE library for the Fragaria genus using ten published strawberry genomes at different ploidy levels, including seven diploids, one tetraploid, and two octoploids, and performed comparative analysis of TE content in these genomes. The TEs comprise 51.83% (F. viridis) to 60.07% (F. nilgerrensis) of the genomes. Long terminal repeat retrotransposons (LTR-RTs) are the predominant TE type in the Fragaria genomes (20.16% to 34.94%), particularly in F. iinumae (34.94%). Estimating TE content and LTR-RT insertion times revealed that species-specific TEs have shaped each strawberry genome. Additionally, the copy number of different LTR-RT families inserted in the last one million years reflects the genetic distance between Fragaria species. Comparing cultivated strawberry subgenomes to extant diploid ancestors showed that F. vesca and F. iinumae are likely the diploid ancestors of the cultivated strawberry, but not F. viridis. These findings provide new insights into the TE variations in the strawberry genomes and their roles in strawberry genome evolution.

23 June 2025 in Explora: Environment and Resource
Verified
Journal Article
Open access
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SSShailja Sharma
Shailja Sharma
SBShiv Bolan
Shiv Bolan
Santanu MukherjeeSantanu Mukherjee
Santanu Mukherjee
PZPingfan Zhou
Pingfan Zhou
XYXiaodong Yang
Xiaodong Yang
NBNanthi Bolan
Nanthi Bolan
Naturally occurring and anthropogenic sources, such as ore (minerals), waste disposal, and mine tailings, can introduce titanium (Ti) into both soils and aquatic environments. Ti is the ninth most abundant element in nature (0.63% w/w) and is found in igneous rocks. Major Ti-bearing minerals include rutile, brookite, anatase, ilmenite, and titanite. Among Ti compounds, Ti dioxide (TiO2) is of particular environmental and health concern. It is classified as potentially carcinogenic to humans (Group 2B) by the International Agency for Research on Cancer. Ti is increasingly used in aviation and aerospace fields and has important biomedical applications, including in joint replacements and dental implants. TiO2 nanoparticles (NPs) are one of the most important Ti compounds, entering the environment through various pathways, including biosolid applications, and have been shown to cause deleterious effects on soil microorganisms and, consequently, on soil functioning and health. Excessive Ti uptake can cause toxicity in plants, soil microorganisms, aquatic organisms, animals, and humans. Dust inhalation of TiO2 NPs by humans may cause chest pain, coughing, and breathing difficulty, while dermal contact may cause irritation. To control the main anthropogenic input sources of Ti in the environment, it is critical to develop affordable technologies for Ti removal during wastewater treatment. This comprehensive review examines the presence, sources, biogeochemical behavior, and potential risks of Ti in the environment and provides an in-depth outline of the network visualization bibliography to graphically represent the relationships between key publications, research areas, and authors. Additionally, future research priorities are suggested for the sustainable management of Ti contamination.