Yong Gong

Prof. Yong Gong

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 September 2022 in Nature
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WCWei Chen
Wei Chen
PCPeng Cao
Peng Cao
YLYuansheng Liu
Yuansheng Liu
AYAiling Yu
Ailing Yu
DWDong Wang
Dong Wang
QYQing Yang
Qing Yang
Chitin, the most abundant aminopolysaccharide in nature, is an extracellular polymer consisting ofN-acetylglucosamine (GlcNAc) units1. The key reactions of chitin biosynthesis are catalysed by chitin synthase2–4, a membrane-integrated glycosyltransferase that transfers GlcNAc from UDP-GlcNAc to a growing chitin chain. However, the precise mechanism of this process has yet to be elucidated. Here we report five cryo-electron microscopy structures of a chitin synthase from the devastating soybean root rot pathogenic oomycetePhytophthora sojae(PsChs1). They represent the apo, GlcNAc-bound, nascent chitin oligomer-bound, UDP-bound (post-synthesis) and chitin synthase inhibitor nikkomycin Z-bound states of the enzyme, providing detailed views into the multiple steps of chitin biosynthesis and its competitive inhibition. The structures reveal the chitin synthesis reaction chamber that has the substrate-binding site, the catalytic centre and the entrance to the polymer-translocating channel that allows the product polymer to be discharged. This arrangement reflects consecutive key events in chitin biosynthesis from UDP-GlcNAc binding and polymer elongation to the release of the product. We identified a swinging loop within the chitin-translocating channel, which acts as a ‘gate lock’ that prevents the substrate from leaving while directing the product polymer into the translocating channel for discharge to the extracellular side of the cell membrane. This work reveals the directional multistep mechanism of chitin biosynthesis and provides a structural basis for inhibition of chitin synthesis.

12 November 2013 in Nature Communications
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CZChunfeng Zhu
Chunfeng Zhu
WGWenying Gao
Wenying Gao
KZKe Zhao
Ke Zhao
XQXiaohong Qin
Xiaohong Qin
YZYinjie Zhang
Yinjie Zhang
XYXiao-Fang Yu
Xiao-Fang Yu
SAMHD1 is a dGTP-activated deoxynucleoside triphosphate triphosphohydrolase (dNTPase) whose dNTPase activity has been linked to HIV/SIV restriction. The mechanism of its dGTP-activated dNTPase function remains unclear. Recent data also indicate that SAMHD1 regulates retrotransposition of LINE-1 elements. Here we report the 1.8-Å crystal structure of homotetrameric SAMHD1 in complex with the allosteric activator and substrate dGTP/dATP. The structure indicates the mechanism of dGTP-dependent tetramer formation, which requires the cooperation of three subunits and two dGTP/dATP molecules at each allosteric site. Allosteric dGTP binding induces conformational changes at the active site, allowing a more stable interaction with the substrate and explaining the dGTP-induced SAMHD1 dNTPase activity. Mutations of dGTP binding residues in the allosteric site affect tetramer formation, dNTPase activity and HIV-1 restriction. dGTP-triggered tetramer formation is also important for SAMHD1-mediated LINE-1 regulation. The structural and functional information provided here should facilitate future investigation of SAMHD1 function, including dNTPase activity, LINE-1 modulation and HIV-1 restriction.

26 February 2015 in Acta Crystallographica Section D Structural Biology
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CZChun-Feng Zhu
Chun-Feng Zhu
WWWei Wei
Wei Wei
XPXin Peng
Xin Peng
YDYu-Hui Dong
Yu-Hui Dong
YGYong Gong
Yong Gong
XYXiao-Fang Yu
Xiao-Fang Yu

24 September 2018 in Scientific Reports
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HWHanqian Wang
Hanqian Wang
XLXiaoqing Liu
Xiaoqing Liu
JZJintong Zhao
Jintong Zhao
QYQingxia Yue
Qingxia Yue
YYYuhua Yan
Yuhua Yan
YGYong Gong
Yong Gong
The multicopper oxidase CueO is involved in copper homeostasis and copper (Cu) tolerance in Escherichia coli. The laccase activity of CueO G304K mutant is higher than wild-type CueO. To explain this increase in activity, we solved the crystal structure of G304K mutant at 1.49 Å. Compared with wild-type CueO, the G304K mutant showed dramatic conformational changes in methionine-rich helix and the relative regulatory loop (R-loop). We further solved the structure of Cu-soaked enzyme, and found that the addition of Cu ions induced further conformational changes in the R-loop and methionine-rich helix as a result of the new Cu-binding sites on the enzyme’s surface. We propose a mechanism for the enhanced laccase activity of the G304K mutant, where movements of the R-loop combined with the changes of the methionine-rich region uncover the T1 Cu site allowing greater access of the substrate. Two of the G304K double mutants showed the enhanced or decreased laccase activity, providing further evidence for the interaction between the R-loop and the methionine-rich region. The cuprous oxidase activity of these mutants was about 20% that of wild-type CueO. These structural features of the G304K mutant provide clues for designing specific substrate-binding mutants in the biotechnological applications.

30 April 2016 in Applied Microbiology and Biotechnology
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LZLikui Zhang
Likui Zhang
YHYanchao Huang
Yanchao Huang
DXDandan Xu
Dandan Xu
LYLixiang Yang
Lixiang Yang
KQKaicheng Qian
Kaicheng Qian
KMKesen Ma
Kesen Ma

30 November 2018 in Molecular Microbiology
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ZZZhenfeng Zhang
Zhenfeng Zhang
MZMohan Zhao
Mohan Zhao
YCYuanyuan Chen
Yuanyuan Chen
LWLi Wang
Li Wang
QLQinghua Liu
Qinghua Liu
LHLi Huang
Li Huang