Fredy Albuquerque Silva

Dr. Fredy Albuquerque Silva

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Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 July 2023 in Viruses
Verified
Journal Article
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SBSâmera de Souza Breves
Sâmera de Souza Breves
FSFredy Albuquerque Silva
Fredy Albuquerque Silva
NENívea C. Euclydes
Nívea C. Euclydes
TSThainá Saia
Thainá Saia
JJJames Jean-Baptiste
James Jean-Baptiste
Elizabeth PB FontesElizabeth PB Fontes
Elizabeth PB Fontes
Begomoviruses, which belong to the Geminiviridae family, are intracellular parasites transmitted by whiteflies to dicotyledonous plants thatsignificantly damage agronomically relevant crops. These nucleus-replicating DNA viruses move intracellularly from the nucleus to the cytoplasm and then, like other plant viruses, cause disease by spreading systemically throughout the plant. The transport proteins of begomoviruses play a crucial role in recruiting host components for the movement of viral DNA within and between cells, while exhibiting functions that suppress the host’s immune defense. Pioneering studies on species of the Begomovirus genus have identified specific viral transport proteins involved in intracellular transport, cell-to-cell movement, and systemic spread. Recent research has primarily focused on viral movement proteins and their interactions with the cellular host transport machinery, which has significantly expanded understanding on viral infection pathways. This review focuses on three components within this context: (i) the role of viral transport proteins, specifically movement proteins (MPs) and nuclear shuttle proteins (NSPs), (ii) their ability to recruit host factors for intra- and intercellular viral movement, and (iii) the suppression of antiviral immunity, with a particular emphasis on bipartite begomoviral movement proteins.

1 June 2013 in BMC Biotechnology
Verified
Journal Article
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MLMarina Duarte Pinto Lobo
Marina Duarte Pinto Lobo
FSFredy Albuquerque Silva
Fredy Albuquerque Silva
PLPatrícia Gadelha de Castro Landim
Patrícia Gadelha de Castro Landim
PCPaloma Ribeiro da Cruz
Paloma Ribeiro da Cruz
TBThaís Lima de Brito
Thaís Lima de Brito
TGThalles Barbosa Grangeiro
Thalles Barbosa Grangeiro
Background: Chromobacterium violaceumis a free-living β-proteobacterium found in tropical and subtropical regions. The genomic sequencing ofC.violaceumATCC 12472 has revealed many genes that underpin its adaptability to diverse ecosystems. Moreover,C.violaceumgenes with potential applications in industry, medicine and agriculture have also been identified, such as those encoding chitinases. However, none of the chitinase genes of the ATCC 12472 strain have been subjected to experimental validation. Chitinases (EC 3.2.1.14) hydrolyze the β-(1,4) linkages in chitin, an abundant biopolymer found in arthropods, mollusks and fungi. These enzymes are of great biotechnological interest as potential biocontrol agents against pests and pathogens. This work aimed to experimentally validate one of the chitinases fromC.violaceum.Results: The open reading frame (ORF) CV2935 ofC.violaceumATCC 12472 encodes a protein (439 residues) that is composed of a signal peptide, a chitin-binding domain, a linker region, and a C-terminal catalytic domain belonging to family 18 of the glycoside hydrolases. The ORF was amplified by PCR and cloned into the expression vector pET303/CT-His. High levels of chitinolytic activity were detected in the cell-free culture supernatant ofE.coliBL21(DE3) cells harboring the recombinant plasmid and induced with IPTG. The secreted recombinant protein was purified by affinity chromatography on a chitin matrix and showed an apparent molecular mass of 43.8 kDa, as estimated by denaturing polyacrylamide gel electrophoresis. N-terminal sequencing confirmed the proper removal of the native signal peptide during the secretion of the recombinant product. The enzyme was able to hydrolyze colloidal chitin and the synthetic substratesp-nitrophenyl-β-D-N,N’-diacetylchitobiose andp-nitrophenyl-β-D-N,N’,N”-triacetylchitotriose. The optimum pH for its activity was 5.0, and the enzyme retained ~32% of its activity when heated to 60°C for 30 min.Conclusions: AC.violaceumchitinase was expressed inE.coliand purified by affinity chromatography on a chitin matrix. The secretion of the recombinant protein into the culture medium was directed by its native signal peptide. The mature enzyme was able to hydrolyze colloidal chitin and synthetic substrates. This newly identified signal peptide is a promising secretion factor that should be further investigated in future studies, aiming to demonstrate its usefulness as an alternative tool for the extracellular production of recombinant proteins inE.coli.



26 November 2014 in Proteomes
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JOJose Oliveira
Jose Oliveira
JAJose H. Araujo-Filho
Jose H. Araujo-Filho
TGThalles Barbosa Grangeiro
Thalles Barbosa Grangeiro
DGDarcy M. F. Gondim
Darcy M. F. Gondim
JSJeferson Segalin
Jeferson Segalin
IVIlka Vasconcelos
Ilka Vasconcelos
The root knot nematodes (RKN), Meloydogine spp., particularly Meloidogyne incognita and Meloidogyne javanica species, parasitize several plant species and are responsible for large annual yield losses all over the world. Only a few available chemical nematicides are still authorized for RKN control owing to environmental and health reasons. Thus, plant resistance is currently considered the method of choice for controlling RKN, and research performed on the molecular interactions between plants and nematodes to identify genes of interest is of paramount importance. The present work aimed to identify the differential accumulation of root proteins of a resistant cowpea genotype (CE-31) inoculated with M. incognita (Race 3) in comparison with mock-inoculated control, using 2D electrophoresis assay, mass spectrometry identification and gene expression analyses by RT-PCR. The results showed that at least 22 proteins were differentially represented in response to RKN challenge of cowpea roots mainly within 4–6 days after inoculation. Amongst the up-represented proteins were SOD, APX, PR-1, β-1,3-glucanase, chitinases, cysteine protease, secondary metabolism enzymes, key enzymes involved in ethylene biosynthesis, proteins involved in MAPK pathway signaling and, surprisingly, leghemoglobin in non-rhizobium-bacterized cowpea. These findings show that an important rearrangement in the resistant cowpea root proteome occurred following challenge with M. incognita.

1 February 2020 in Journal of Plant Physiology
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Journal Article
Closed access
Pedro SouzaPedro Souza
Pedro Souza
JOJose Oliveira
Jose Oliveira
IVIlka Maria Vasconcelos
Ilka Maria Vasconcelos
VMVladimir Gonçalves Magalhães
Vladimir Gonçalves Magalhães
FSFredy Albuquerque Silva
Fredy Albuquerque Silva
FCFabricio Eulalio Leite Carvalho
Fabricio Eulalio Leite Carvalho