This collaborative work by over 180 researchers from 40+ countries addresses the challenges posed by “phantom agents”—putative pathogenic agents named in literature without supporting data on their existence. Those agents remain on regulatory lists, creating barriers in trade and plant certification. Historically identified based solely on symptoms, these agents lack isolates or sequence data, making reliable detection or risk assessment impossible. After reviewing over 120 such agents across 10 key plant genera, we recommend their removal from regulatory lists and call for revised standards aligned with modern diagnostics. This effort seeks to streamline germplasm exchange, benefiting global agriculture by removing the constraints imposed by phantoms.
Common buckwheat (Fagopyrum esculentum Moench.) has a long history of cultivation in the large, mountainous regions of Bosnia and Herzegovina (B&H). Its commercial production is mainly based on the regionally bred variety ‘Darja’, but numerous landraces are also being grown on a smaller scale. As part of the SEEDNet (Southeast European Network on Plant Genetic Resources) project, these landraces have been collected and stored at the Gene bank of the Faculty of Agriculture and Food Sciences in Sarajevo (FAFS). To assess their utilization value, it was first important to investigate if they represent distinct landraces and to identify their genetic relationships with the most commonly grown varieties in the region (‘Darja’, ‘Goluba’ and ‘Čebelica’). Therefore, the aim of this study was to assess the genetic relationships and diversity of the common buckwheat accessions maintained at the FAFS Gene bank, as well as the value of these accessions for future breeding programs, using microsatellite markers and seventeen quantitative and fifteen qualitative morphological traits. The FCA (Factorial Correspondence Analysis) and AMOVA (Analysis of Molecular Variance) revealed that several accessions represent completely distinct landraces which clearly differentiated from the most commonly grown cultivars ‘Darja’ and ‘Goluba’. Conducted morphological analyses revealed that several of the analyzed landraces hold similar characteristics to the ones observed in ‘Darja’ and ‘Goluba’, while others possess unique traits potentially useful in breeding programs.
In order to fill in a decade-long information gap regarding the biological, serological and molecular data for plum tree viruses in Bosnia and Herzegovina, a three-phase study combining symptom evaluation, and serological and molecular assays with high-throughput sequencing (HTS) technology was conducted. The most frequently observed symptoms were discolorations in the form of ring patterns, bands and irregular shapes, as well as vein banding. Sharka-associated symptoms in the form of ring patterns and semicircles were prevalent. A total of 468 plum tree samples were tested by ELISA for the presence of PPV, ApMV, PDV, PNRSV, PBNSPaV, ACLSV and MLRSV. An overall infection incidence of 51.9% was detected, with PPV being the most prevalent (48.7%), followed by PDV (2.99%), PNRSV (0.21%) and mixed infections of PPV+PDV (1.71%). RT-PCR-assisted strain typing in 45 samples revealed PPV-D as the most common strain (22.22%), followed by PPV-REC (6.66%). Mixed infections of PPV-D+PPV-REC were detected (6.66%). HTS enabled the recovery of a 9743 nts long sequence of PPV-D (PPV_O7/80, MW412433), which shared the highest nucleotide and amino acid identities with isolates S13 (LC375131) from Serbia, SVN1 (LC375132) from Slovenia and N9 (LC375129) from Bulgaria. The phylogenetic analysis of the whole genome placed the isolate of the D strain in a distinctive group with the Slovenian isolate SVN1 (LC375132). In addition, the (Cter)NIb/(Nter)CP fragment of a PPV-REC isolate (MW412434) obtained in this survey formed a separate group with previously known isolates from Bosnia and Herzegovina (BOS64Pl and BOS257Pl).