Ricardo Andres Zamora

Dr. Ricardo Andres Zamora

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Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 September 2016 in Frontiers in Microbiology
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Journal Article
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MSMargarita Santiago
Margarita Santiago
CRCesar A Ramirez-Sarmiento
Cesar A Ramirez-Sarmiento
RZRicardo Andres Zamora
Ricardo Andres Zamora
LPLoreto Parra
Loreto Parra
Cold-active enzymes constitute an attractive resource for biotechnological applications. Their high catalytic activity at temperatures below 25 ºC makes them excellent biocatalysts that eliminate the need of heating processes hampering the quality, sustainability and cost-effectiveness of industrial production. Here we provide a review of the isolation and characterization of novel cold-active enzymes from microorganisms inhabiting different environments, including a revision of the latest techniques that have been used for accomplishing these paramount tasks. We address the progress made in the overexpression and purification of cold-adapted enzymes, the evolutionary and molecular basis of their high activity at low temperatures and the experimental and computational techniques used for their identification, along with protein engineering endeavors based on these observations to improve some of the properties of cold-adapted enzymes to better suit specific applications. We finally focus on examples of the evaluation of their potential use as biocatalysts under conditions that reproduce the challenges imposed by the use of solvents and additives in industrial processes and of the successful use of cold-adapted enzymes in biotechnological and industrial applications.

19 October 2018 in Physical Chemistry Chemical Physics
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Journal Article
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DZDaniel Zúñiga
Daniel Zúñiga
RZRicardo Andres Zamora
Ricardo Andres Zamora
PBPablo Barrias
Pablo Barrias
CTCristian Tirapegui
Cristian Tirapegui
HPHoracio Poblete
Horacio Poblete
AAAlexis Aspée
Alexis Aspée
Analysis of the potential energy barriers and structural dynamics of a new TICT-probe for monitoring biological environments.

6 June 2022 in Advanced Materials
Verified
Journal Article
Open access
AWAnna M. Wagner
Anna M. Wagner
HEHiromune Eto
Hiromune Eto
AJAnton Joseph
Anton Joseph
SKShunshi Kohyama
Shunshi Kohyama
THTamás Haraszti
Tamás Haraszti
CRCésar Rodríguez-Emmenegger
César Rodríguez-Emmenegger
The integration of active cell machinery with synthetic building blocks is the bridge toward developing synthetic cells with biological functions and beyond. Self‐replication is one of the most important tasks of living systems, and various complex machineries exist to execute it. In Escherichia coli, a contractile division ring is positioned to mid‐cell by concentration oscillations of self‐organizing proteins (MinCDE), where it severs membrane and cell wall. So far, the reconstitution of any cell division machinery has exclusively been tied to liposomes. Here, the reconstitution of a rudimentary bacterial divisome in fully synthetic bicomponent dendrimersomes is shown. By tuning the membrane composition, the interaction of biological machinery with synthetic membranes can be tailored to reproduce its dynamic behavior. This constitutes an important breakthrough in the assembly of synthetic cells with biological elements, as tuning of membrane–divisome interactions is the key to engineering emergent biological behavior from the bottom‐up.

31 August 2020 in ACS Catalysis
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Journal Article
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RZRicardo Andres Zamora
Ricardo Andres Zamora
CRCesar A. Ramirez-Sarmiento
Cesar A. Ramirez-Sarmiento
VCVictor Castro-Fernandez
Victor Castro-Fernandez
Pablo VillalobosPablo Villalobos
Pablo Villalobos
PMPablo Maturana
Pablo Maturana
VGVictoria Guixe
Victoria Guixe

7 December 2021 in Small
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Journal Article
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MLManuel López‐Ortiz
Manuel López‐Ortiz
RZRicardo Andres Zamora
Ricardo Andres Zamora
MGMarina Inés Giannotti
Marina Inés Giannotti
CHChen Hu
Chen Hu
RCRoberta Croce
Roberta Croce
PGPau Gorostiza
Pau Gorostiza

26 June 2018 in Frontiers in Microbiology
Verified
Journal Article
Open access
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FGFelipe Gonzalez-Ordenes
Felipe Gonzalez-Ordenes
PCPablo A. Cea
Pablo A. Cea
NFNicolás Fuentes-Ugarte
Nicolás Fuentes-Ugarte
SMSebastián M. Muñoz
Sebastián M. Muñoz
RZRicardo Andres Zamora
Ricardo Andres Zamora
VGVictoria Guixe
Victoria Guixe
Halophilic organisms inhabit hypersaline environments where the extreme ionic conditions and osmotic pressure have driven the evolution of molecular adaptation mechanisms. Understanding such mechanisms is limited by the common difficulties encountered in cultivating such organisms. Within the Euryarchaeota, for example, only the Halobacteria and the order Methanosarcinales include readily cultivable halophilic species. Furthermore, only the former have been extensively studied in terms of their component proteins. Here, in order to redress this imbalance, we investigate the halophilic adaptation of glycolytic enzymes from the ADP-dependent phosphofructokinase/glucokinase family (ADP-PFK/GK) derived from organisms of the order Methanosarcinales. Structural analysis of proteins from non-halophilic and halophilic Methanosarcinales shows an almost identical composition and distribution of amino acids on both the surface and within the core. However, these differ from those observed in Halobacteria or Eukarya. Proteins from Methanosarcinales display a remarkable increase in surface lysine content and have no reduction to the hydrophobic core, contrary to the features ubiquitously observed in Halobacteria and which are thought to be the main features responsible for their halophilic properties. Biochemical characterization of recombinant ADP-PFK/GK from M. evestigatum (halophilic) and M. mazei (non-halophilic) shows the activity of both these extant enzymes to be only moderately inhibited by salt. Nonetheless, its activity over time is notoriously stabilized by salt. Furthermore, glycine betaine has a protective effect against KCl inhibition and enhances the thermal stability of both enzymes. The resurrection of the last common ancestor of ADP-PFK/GK from Methanosarcinales shows that the ancestral enzyme displays an extremely high salt tolerance and thermal stability. Structure determination of the ancestral protein reveals unique traits such as an increase in the Lys and Glu content at the protein surface and yet no reduction to the volume of the hydrophobic core. Our results suggest that the halophilic character is an ancient trait in the evolution of this protein family and that proteins from Methanosarcinales have adapted to highly saline environments by a non-canonical strategy, different from that currently proposed for Halobacteria. These results open up new avenues for the search and development of novel salt tolerant biocatalysts.