Planktonic foraminifera are one of the most abundant and diverse protists in the oceans. Their utility as paleo proxies requires rigorous taxonomy and comparison with living and genetically related counterparts. We merge genetic and fossil evidence of “Globigerinoides”, characterized by supplementary apertures on spiral side, in a new approach to trace their “total evidence phylogeny” since their first appearance in the latest Paleogene. Combined fossil and molecular genetic data indicate that this genus, as traditionally understood, is polyphyletic. Both datasets indicate the existence of two distinct lineages that evolved independently. One group includes “Globigerinoides” trilobus and its descendants, the extant “Globigerinoides” sacculifer, Orbulina universa and Sphaeroidinella dehiscens. The second group includes the Globigerinoides ruber clade with the extant G. conglobatus and G. elongatus and ancestors. In molecular phylogenies, the trilobus group is not the sister taxon of the ruber group. The ruber group clusters consistently together with the modern Globoturborotalita rubescens as a sister taxon. The re-analysis of the fossil record indicates that the first “Globigerinoides” in the late Oligocene are ancestral to the trilobus group, whereas the ruber group first appeared at the base of the Miocene with representatives distinct from the trilobus group. Therefore, polyphyly of the genus "Globigerinoides" as currently defined can only be avoided either by broadening the genus concept to include G. rubescens and a large number of fossil species without supplementary apertures, or if the trilobus group is assigned to a separate genus. Since the former is not feasible due to the lack of a clear diagnosis for such a broad genus, we erect a new genus Trilobatus for the trilobus group (type species Globigerina triloba Reuss) and amend Globoturborotalita and Globigerinoides to clarify morphology and wall textures of these genera. In the new concept, Trilobatus n. gen. is paraphyletic and gave rise to the Praeorbulina / Orbulina and Sphaeroidinellopsis / Sphaeroidinella lineages.

Foraminifera are protozoans with biomineralized tests that can be successfully used as a low cost monitoring tool to assess the health status of marine environments. Living benthic foraminiferal assemblages can provide essential information on natural and/or anthropogenic stresses and provide baseline conditions for studies on fossil material. Several studies have highlighted the negative impact of phosphate treatment industries along the Gulf of Gabes (Lesser Syrtis, Tunisia) on the marine environment. However, only a few studies, based on living (stained) benthic foraminifera, are presently available to assess environmental and/or ecological conditions in this Gulf. Thirty-eight surface sediment samples were quantitatively investigated to identify the dominant living benthic foraminiferal species and potential pollution-sensitive and stress-tolerant species. One-hundred and sixty-one species were identified, and grouped into seven clusters representing different environments within the Gulf. These groups represent polluted settings (Cluster A and B), polluted environments characterized by physicochemical variability (Cluster C), seagrass meadows and “pristine” sites (Cluster D and E) and the region subjected to major industrial impact (Cluster F). The final outlier Cluster, identified the foraminifera barren and all shallow coastal stations. A SIMPER analysis helped identify species with clear and fast responses to environmental perturbations (Ammonia tepida,Amphistegina lessonii,Brizalina striatula,Bulimina marginata,Buliminella elegantissima,Eggereloides scaber,Peneroplis perutusus,Rosalina macropora,Rosalina villardeboana,Trochammina inflata). A comparison with the measured geochemical parameters (TOC, phosphorus in the sediments and heavy metal concentrations in the seawater) has shown that the benthic foraminiferal assemblages are mainly linked to phosphorus, TOC, As and Cd pollution. We also provide here the first compilation of the identified living species in the Lesser Syrtis, their synonyms and digital images of important species.