Jan Commandeur

Dr. Jan Commandeur


Research Focus & Metrics

Academic Career Length

36Years (1991-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 January 2012 in ChemBioChem
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HVHarini Venkataraman
Harini Venkataraman
SBStephanie B. A. de Beer
Stephanie B. A. de Beer
LBLaura A. H. van Bergen
Laura A. H. van Bergen
NENick van Essen
Nick van Essen
DGDaan Geerke
Daan Geerke
JCJan Commandeur
Jan Commandeur

13 May 2011 in JBIC Journal of Biological Inorganic Chemistry
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EVEduardo Vottero
Eduardo Vottero
VRVanina Rea
Vanina Rea
JLJeroen Lastdrager
Jeroen Lastdrager
MHMaarten Honing
Maarten Honing
NVNico P. E. Vermeulen
Nico P. E. Vermeulen
JCJan Commandeur
Jan Commandeur
CYP102A1, originating from Bacillus megaterium, is a highly active enzyme which has attracted much attention because of its potential applicability as a biocatalyst for oxidative reactions. Previously we developed drug-metabolizing mutant CYP102A1 M11 by a combination of site-directed and random mutagenesis. CYP102A1 M11 contains eight mutations, when compared with wild-type CYP102A1, and is able to produce human-relevant metabolites of several pharmaceuticals. In this study, active-site residue 87 of drug-metabolizing mutant CYP102A1 M11 was mutated to all possible natural amino acids to investigate its role in substrate selectivity and regioselectivity. With alkoxyresorufins as substrates, large differences in substrate selectivities and coupling efficiencies were found, dependent on the nature of residue 87. For all combinations of alkoxyresorufins and mutants, extremely fast rates of NADPH oxidation were observed (up to 6,000 min−1). However, the coupling efficiencies were extremely low: even for the substrates showing the highest rates of O-dealkylation, coupling efficiencies were lower than 1%. With testosterone as the substrate, all mutants were able to produce three hydroxytestosterone metabolites, although with different activities and with remarkably different product ratios. The results show that the nature of the amino acid at position 87 has a strong effect on activity and regioselectivity in the drug-metabolizing mutant CYP102A1 M11. Because of the wide substrate selectivity of CYP102A1 M11 when compared with wild-type CYP102A1, this panel of mutants will be useful both as biocatalysts for metabolite production and as model proteins for mechanistic studies on the function of P450s in general.

18 June 1999 in Chemical Research in Toxicology
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RORob C. A. Onderwater
Rob C. A. Onderwater
JVJennifer Venhorst
Jennifer Venhorst
JCJan Commandeur
Jan Commandeur
NVNico P. E. Vermeulen
Nico P. E. Vermeulen

1 March 2018 in Toxicology Letters
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KLKatarzyna E. Lazarska
Katarzyna E. Lazarska
SDStefan J. Dekker
Stefan J. Dekker
NVNico P.E. Vermeulen
Nico P.E. Vermeulen
JCJan Commandeur
Jan Commandeur
The use of diclofenac is associated with rare but severe drug-induced liver injury (DILI) in a very small number of patients. The factors which predispose susceptible patients to hepatotoxicity of diclofenac are still incompletely understood. Formation of protein-reactive metabolites by UDP-glucuronosyl transferases and cytochromes P450 is commonly considered to play an important role, as indicated by the detection of covalent protein adducts and antibodies in the serum of patients suffering from diclofenac-induced liver injury. Since no associations have been found with HLA-alleles, polymorphisms of genes encoding for proteins involved in the disposition of diclofenac may be important. Previous association studies showed that possession of the UGT2B7*2 and CYP2C8*4 alleles is more common in cases of diclofenac-induced DILI. In the present study, the metabolism of diclofenac by UGT2B7*2 and CYP2C8*4 was compared with their corresponding wild-type enzymes. Enzyme kinetic analysis revealed that recombinant UGT2B7*2 showed an almost 6-fold lower intrinsic clearance of diclofenac glucuronidation compared to UGT2B7*1. The mutant CYP2C8*4 showed approximately 35% reduced activity in the 4'-hydroxylation of diclofenac acyl glucuronide. Therefore, a decreased hepatic exposure to diclofenac acyl glucuronide is expected in patients with the UGT2B7*2 genotype. The increased risk for hepatotoxicity, therefore, might be the result from a shift to oxidative bioactivation to cytotoxic quinoneimines.

12 January 2012 in Biochemistry
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VRV. Rea
V. Rea
AKA. J. Kolkman
A. J. Kolkman
EVE. Vottero
E. Vottero
ESE. J. Stronks
E. J. Stronks
KAK. A. M. Ampt
K. A. M. Ampt
JCJan Commandeur
Jan Commandeur

16 December 2000 in Chemical Research in Toxicology
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Journal Article
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MRMartijn Rooseboom
Martijn Rooseboom
JCJan Commandeur
Jan Commandeur
GFGerrit C. Floor
Gerrit C. Floor
ARAllan E. Rettie
Allan E. Rettie
NVNico P. E. Vermeulen
Nico P. E. Vermeulen