Shima Javanamrdi

Ms. Shima Javanamrdi

Leiden University, Leiden, The Netherlands
orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 July 2021 in IEEE Access
Verified
Journal Article
Open access
SASeyed-Hassan Miraei Ashtiani
Seyed-Hassan Miraei Ashtiani
SJShima Javanamrdi
Shima Javanamrdi
MJMehrdad Jahanbanifard
Mehrdad Jahanbanifard
Alex MartynenkoAlex Martynenko
Alex Martynenko
FVFons J. Verbeek
Fons J. Verbeek
Ripeness classification is one of the most challenging tasks in the postharvest management of mulberry fruit. The risks of microbial contamination and human error in manual sorting are significant; it may result in quality degradation and wasting of processed products. Due to advanced developments in computer vision and machine learning, automated sorting became possible. This study presents the results of developing and testing a computer vision-based application using convolutional neural networks (CNNs) for the classification of mulberry fruit ripening stages. To reduce the training cost and improve the accuracy of classification, transfer learning was used to fine-tune the CNN models. The CNN models in the test include DenseNet, Inception-v3, ResNet-18, ResNet-50, and AlexNet. Transfer learning was used to fine-tune the models and improve the accuracy of classification. The AlexNet and ResNet-18 networks exhibited the best performance with 98.32% and 98.65% overall accuracy for classifying the ripeness of white and black mulberries, respectively. Moreover, the performance of the models did not change when the data sets of both genotypes were mixed. The ResNet-18 was able to classify both genotype and ripeness from 600 fruit images in 2.36 min with an overall accuracy of 98.03%, which was superior to other architectures. It indicates that the model could be used for precise classification of the ripening stages of mulberries and other horticultural products, as a part of an automated sorting system.

1 November 2022 in Sensors
Verified
Journal Article
Open access
PDF file
SJShima Javanamrdi
Shima Javanamrdi
ALAli Mohammad Latif
Ali Mohammad Latif
MSMohammad Taghi Sadeghi
Mohammad Taghi Sadeghi
MJMehrdad Jahanbanifard
Mehrdad Jahanbanifard
MBMarcello Bonsangue
Marcello Bonsangue
FVFons Verbeek
Fons Verbeek
In image captioning models, the main challenge in describing an image is identifying all the objects by precisely considering the relationships between the objects and producing various captions. Over the past few years, many methods have been proposed, from an attribute-to-attribute comparison approach to handling issues related to semantics and their relationships. Despite the improvements, the existing techniques suffer from inadequate positional and geometrical attributes concepts. The reason is that most of the abovementioned approaches depend on Convolutional Neural Networks (CNNs) for object detection. CNN is notorious for failing to detect equivariance and rotational invariance in objects. Moreover, the pooling layers in CNNs cause valuable information to be lost. Inspired by the recent successful approaches, this paper introduces a novel framework for extracting meaningful descriptions based on a parallelized capsule network that describes the content of images through a high level of understanding of the semantic contents of an image. The main contribution of this paper is proposing a new method that not only overrides the limitations of CNNs but also generates descriptions with a wide variety of words by using Wikipedia. In our framework, capsules focus on the generation of meaningful descriptions with more detailed spatial and geometrical attributes for a given set of images by considering the position of the entities as well as their relationships. Qualitative experiments on the benchmark dataset MS-COCO show that our framework outperforms state-of-the-art image captioning models when describing the semantic content of the images.

26 July 2023 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
XTXiaoqin Tang
Xiaoqin Tang
LLLingpeng Lv
Lingpeng Lv
SJShima Javanamrdi
Shima Javanamrdi
YWYunfeng Wang
Yunfeng Wang
JFJingchuan Fan
Jingchuan Fan
GXGuoqiang Xiao
Guoqiang Xiao
Automated nanoparticle phenotyping is a critical aspect of high-throughput drug research, which requires analyzing nanoparticle size, shape, and surface topography from microscopy images. To automate this process, we present an instance segmentation pipeline that partitions individual nanoparticles on microscopy images. Our pipeline makes two key contributions. Firstly, we synthesize diverse and approximately realistic nanoparticle images to improve robust learning. Secondly, we improve the BlendMask model to segment tiny, overlapping, or sparse particle images. Specifically, we propose a parameterized approach for generating novel pairs of single particles and their masks, encouraging greater diversity in the training data. To synthesize more realistic particle images, we explore three particle placement rules and an image selection criterion. The improved one-stage instance segmentation network extracts distinctive features of nanoparticles and their context at both local and global levels, which addresses the data challenges associated with tiny, overlapping, or sparse nanoparticles. Extensive experiments demonstrate the effectiveness of our pipeline for automating nanoparticle partitioning and phenotyping in drug research using microscopy images.