Stefan Bagby

Dr. Stefan Bagby


Research Focus & Metrics

Academic Career Length

39Years (1988-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 January 1995 in Science
Verified
Journal Article
Closed access
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MOMichael Overduin
Michael Overduin
THTimothy S. Harvey
Timothy S. Harvey
SBStefan Bagby
Stefan Bagby
KTKit I. Tong
Kit I. Tong
PYPatrick Yau
Patrick Yau
MIMitsuhiko Ikura
Mitsuhiko Ikura
Cadherins are calcium-dependent cell adhesion molecules containing extracellular repeats of approximately 110 amino acids. The three-dimensional structure of the amino-terminal repeat of mouse epithelial cadherin was determined by multidimensional heteronuclear magnetic resonance spectroscopy. The calcium ion was bound by a short α helix and by loops at one end of the seven-stranded β-barrel structure. An exposed concave face is in a position to provide homophilic binding specificity and was also sensitive to calcium ligation. Unexpected structural similarities with the immunoglobulin fold suggest an evolutionary relation between calcium-dependent and calcium-independent cell adhesion molecules.

16 March 2015 in Nature
Verified
Journal Article
Open access
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SPSean Porazinski
Sean Porazinski
HWHuijia Wang
Huijia Wang
YAYoichi Asaoka
Yoichi Asaoka
MBMartin Behrndt
Martin Behrndt
TMTatsuo Miyamoto
Tatsuo Miyamoto
MFMakoto Furutani-Seiki
Makoto Furutani-Seiki
D’Arcy Thompson predicted a century ago that animal body shape is conditioned by gravity, but there has been no animal model to study how cellular forces are coordinated to generate body shapes that withstand gravity; the hirame medaka fish mutant, with pronounced body flattening, reveals how the hirame/YAP gene controls gravity-resisting cellular forces to produce complex 3D organs and body shapes. How is tissue tension controlled at the organismal level to maintain body shape and complex three-dimensional structures? Makoto Furutani-Seiki and colleagues describe a medaka fish mutant, hirame (hir), with a flattened body. They show that the phenotype is due to reduction of internal forces caused by the absence of YAP protein, part of the Hippo signalling pathway. This striking effect is linked to the control exerted by YAP on actomyosin-mediated tension through the regulation of the RhoGAP GTPase activating protein ARHGAP18. YAP also controls the 3D structure of human cell spheres in this manner in a human cell culture system. Vertebrates have a unique 3D body shape in which correct tissue and organ shape and alignment are essential for function. For example, vision requires the lens to be centred in the eye cup which must in turn be correctly positioned in the head1. Tissue morphogenesis depends on force generation, force transmission through the tissue, and response of tissues and extracellular matrix to force2,3. Although a century ago D’Arcy Thompson postulated that terrestrial animal body shapes are conditioned by gravity4, there has been no animal model directly demonstrating how the aforementioned mechano-morphogenetic processes are coordinated to generate a body shape that withstands gravity. Here we report a unique medaka fish (Oryzias latipes) mutant, hirame (hir), which is sensitive to deformation by gravity. hir embryos display a markedly flattened body caused by mutation of YAP, a nuclear executor of Hippo signalling that regulates organ size. We show that actomyosin-mediated tissue tension is reduced in hir embryos, leading to tissue flattening and tissue misalignment, both of which contribute to body flattening. By analysing YAP function in 3D spheroids of human cells, we identify the Rho GTPase activating protein ARHGAP18 as an effector of YAP in controlling tissue tension. Together, these findings reveal a previously unrecognised function of YAP in regulating tissue shape and alignment required for proper 3D body shape. Understanding this morphogenetic function of YAP could facilitate the use of embryonic stem cells to generate complex organs requiring correct alignment of multiple tissues.

1 September 1998 in Cell
Verified
Journal Article
Closed access
DLDingjiang Liu
Dingjiang Liu
RIRieko Ishima
Rieko Ishima
KTKit I Tong
Kit I Tong
SBStefan Bagby
Stefan Bagby
TKTetsuro Kokubo
Tetsuro Kokubo
MIMitsuhiko Ikura
Mitsuhiko Ikura

1 March 2008 in Molecular Immunology
Verified
Journal Article
Closed access
KAKaren L. Atkins
Karen L. Atkins
JBJulia D. Burman
Julia D. Burman
ECEmily S. Chamberlain
Emily S. Chamberlain
JCJessica E. Cooper
Jessica E. Cooper
BPBernard Poutrel
Bernard Poutrel
Jean van den ElsenJean van den Elsen
Jean van den Elsen

1 June 2008 in Journal of Biological Chemistry
Verified
Journal Article
Open access
PDF file
JBJulia D. Burman
Julia D. Burman
ELElisa Leung
Elisa Leung
KAKaren L. Atkins
Karen L. Atkins
MOMaghnus N. O'SEaghdha
Maghnus N. O'SEaghdha
LLLea Lango
Lea Lango
Jean van den ElsenJean van den Elsen
Jean van den Elsen
Staphylococcal immunoglobulin-binding protein, Sbi, is a 436-residue protein produced by many strains of Staphylococcus aureus. It was previously characterized as being cell surface-associated and having binding capacity for human IgG and β2-glycoprotein I. Here we show using small angle x-ray scattering that the proposed extracellular region of Sbi (Sbi-E) is an elongated molecule consisting of four globular domains, two immunoglobulin-binding domains (I and II) and two novel domains (III and IV). We further show that together domains III and IV (Sbi-III-IV), as well as domain IV on its own (Sbi-IV), bind complement component C3 via contacts involving both the C3dg fragment and the C3a anaphylatoxin domain. Preincubation of human serum with either Sbi-E or Sbi-III-IV is inhibitory to all complement pathways, whereas domain IV specifically inhibits the alternative pathway. Monitoring C3 activation in serum incubated with Sbi fragments reveals that Sbi-E and Sbi-III-IV both activate the alternative pathway, leading to consumption of C3. By contrast, inhibition of this pathway by Sbi-IV does not involve C3 consumption. The observation that Sbi-E activates the alternative pathway is counterintuitive to intact Sbi being cell wall-associated, as recruiting complement to the surface of S. aureus would be deleterious to the bacterium. Upon re-examination of this issue, we found that Sbi was not associated with the cell wall fraction, but rather was found in the growth medium, consistent with it being an excreted protein. As such, our data suggest that Sbi helps mediate bacterial evasion of complement via a novel mechanism, namely futile fluid-phase consumption.

1 September 1995 in Cell
Verified
Journal Article
Closed access
SBStefan Bagby
Stefan Bagby
SKSungjoon Kim
Sungjoon Kim
EMEdio Maldonado
Edio Maldonado
KTKit I Tong
Kit I Tong
DRDanny Reinberg
Danny Reinberg
MIMitsuhiko Ikura
Mitsuhiko Ikura