Marius Karger

Mr. Marius Karger

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 August 2023 in Biomolecules
Verified
Journal Article
Open access
PDF file
CLChristopher Lambert
Christopher Lambert
KSKatharina Schmidt
Katharina Schmidt
MKMarius Karger
Marius Karger
Marc StadlerMarc Stadler
Marc Stadler
Theresia E.B. StradalTheresia E.B. Stradal
Theresia E.B. Stradal
Klemens RottnerKlemens Rottner
Klemens Rottner
The eukaryotic actin cytoskeleton comprises the protein itself in its monomeric and filamentous forms, G- and F-actin, as well as multiple interaction partners (actin-binding proteins, ABPs). This gives rise to a temporally and spatially controlled, dynamic network, eliciting a plethora of motility-associated processes. To interfere with the complex inter- and intracellular interactions the actin cytoskeleton confers, small molecular inhibitors have been used, foremost of all to study the relevance of actin filaments and their turnover for various cellular processes. The most prominent inhibitors act by, e.g., sequestering monomers or by interfering with the polymerization of new filaments and the elongation of existing filaments. Among these inhibitors used as tool compounds are the cytochalasans, fungal secondary metabolites known for decades and exploited for their F-actin polymerization inhibitory capabilities. In spite of their application as tool compounds for decades, comprehensive data are lacking that explain (i) how the structural deviances of the more than 400 cytochalasans described to date influence their bioactivity mechanistically and (ii) how the intricate network of ABPs reacts (or adapts) to cytochalasan binding. This review thus aims to summarize the information available concerning the structural features of cytochalasans and their influence on the described activities on cell morphology and actin cytoskeleton organization in eukaryotic cells.

8 June 2022 in Molecules
Verified
Journal Article
Open access
PDF file
KOKevin Dennis Oliphant
Kevin Dennis Oliphant
MKMarius Karger
Marius Karger
YNYoichi Nakanishi
Yoichi Nakanishi
Ralf-Rainer MendelRalf-Rainer Mendel
Ralf-Rainer Mendel
Molybdenum (Mo) is an essential trace element in all kingdoms of life. Mo is bioavailable as the oxyanion molybdate and gains biological activity in eukaryotes when bound to molybdopterin, forming the molybdenum cofactor. The imbalance of molybdate homeostasis results in growth deficiencies or toxic symptoms within plants, fungi and animals. Recently, fluorescence resonance energy transfer (FRET) methods have emerged, monitoring cellular and subcellular molybdate distribution dynamics using a genetically encoded molybdate-specific FRET nanosensor, named MolyProbe. Here, we show that the MolyProbe system is a fast and reliable in vitro assay for quantitative molybdate determination. We added a Strep-TagII affinity tag to the MolyProbe protein for quick and easy purification. This MolyProbe is highly stable, resistant to freezing and can be stored for several weeks at 4 °C. Furthermore, the molybdate sensitivity of the assay peaked at low nM levels. Additionally, The MolyProbe was applied in vitro for quantitative molybdate determination in cell extracts of the plant Arabidopsis thaliana, the fungus Neurospora crassa and the yeast Saccharomyces cerevisiae. Our results show the functionality of the Arabidopsis thaliana molybdate transporter MOT1.1 and indicate that FRET-based molybdate detection is an excellent tool for measuring bioavailable Mo.

16 July 2025 in Biomolecules
Verified
Journal Article
Open access
CLChristopher Lambert
Christopher Lambert
KSKatharina Schmidt
Katharina Schmidt
MKMarius Karger
Marius Karger
Marc StadlerMarc Stadler
Marc Stadler
Theresia E.B. StradalTheresia E.B. Stradal
Theresia E.B. Stradal
Klemens RottnerKlemens Rottner
Klemens Rottner
In the original publication [...].

16 September 2026 in Nature Communications
Verified
Journal Article
Open access
PDF file
YTYubo Tang
Yubo Tang
MSMatthias Schaks
Matthias Schaks
XJXinqi Jiang
Xinqi Jiang
MKMarius Karger
Marius Karger
MMMagdalena Mietkowska
Magdalena Mietkowska
Klemens RottnerKlemens Rottner
Klemens Rottner
Cell migration frequently employs protrusions termed lamellipodia, constituting the prime model system for generation of branched actin filament networks. Here we utilize genome editing to explore the functional connections between the actin monomer-binding protein profilin (Pfn), the filament nucleating Arp2/3 complex, its co-factor heterodimeric capping protein (CP) and Ena/VASP family polymerases in lamellipodial actin assembly. We show that Pfn counters Ena/VASP but promotes Arp2/3 complex activity, while Ena/VASP and CP mutually antagonize each other. While Pfn promotes Arp2/3 complex activity irrespective of Ena/VASP, sensitivity of CP to Pfn removal vanishes in the absence of Ena/VASP. Our findings establish Pfn as master regulator of Arp2/3 complex-dependent actin network formation, differentially regulating VASP and its antagonizer CP. Mathematical modeling of our data suggest Ena/VASP and CP to compete for recruitment to lamellipodial edges. Our work provides critical insights into the molecular logic of branched actin network assembly in protrusion and force generation.

17 October 2025 in ChemRxiv
Verified
Preprint
Open access
PDF file
MKMervic D. Kagho
Mervic D. Kagho
KSKatharina Schmidt
Katharina Schmidt
ACAishi Chakrabarti
Aishi Chakrabarti
MKMarius Karger
Marius Karger
CLChristopher Lambert
Christopher Lambert
PKPhillip Klahn
Phillip Klahn
The actin cytoskeleton plays a central role in cellular organization and dynamics, yet the tools available for targeting actin function remain limited. Cytochalasans represent a large class of actin-targeting natural products that are readily cell-permeable with varying cytotoxicity and actin-targeting capabilities in mammalian cells. Their pharmacologic exploitation not only requires an understanding of their mode of action but also exact knowledge of how they can be derivatized without affecting their bioactivity. Here, we report the design, synthesis, and evaluation of five fluorescently labeled [11]cytochalasan derivatives generated from pyrichalasin H (PyriH) and 19,20-epoxycytochalasin C (EpoxyCytoC). Guided by molecular docking, we identified the C21-OAc moiety as a promising site for tag attachment without disrupting actin binding. Semi-synthetic modifications enabled the conjugation of different dyes to PyriH and EpoxyCytoC scaffolds. Moreover, the effect of linkers separating cytochalasans and dyes was analyzed. Biological evaluation supplemented by in vitro assays to additionally interrogate their activities on the assembly of pure actin filaments revealed distinct activity profiles. Together, this study compares permeability, cytotoxicity, and actin binding of five novel [11]cytochalasan probes bearing substitutions of the C21-OAc moiety. Our findings establish the C21-OAc position as a versatile functionalization site and provide a framework for developing next generation cytochalasan-based actin targeting probes.

27 November 2025 in ChemBioChem
Verified
Journal Article
Open access
MKMervic D. Kagho
Mervic D. Kagho
KSKatharina Schmidt
Katharina Schmidt
ACAishi Chakrabarti
Aishi Chakrabarti
MKMarius Karger
Marius Karger
CLChristopher Lambert
Christopher Lambert
PKPhillip Klahn
Phillip Klahn
The actin cytoskeleton plays a central role in cellular organization and dynamics, yet the tools available for targeting actin function remain limited. Cytochalasans represent a large class of actin‐targeting natural products that are readily cell permeable with varying cytotoxicity and actin‐targeting capabilities in mammalian cells. Their pharmacologic exploitation not only requires an understanding of their mode of action but also exact knowledge of how they can be derivatized without affecting their bioactivity. Herein, the design, synthesis, and evaluation of five fluorescently labeled [11]cytochalasan derivatives generated from pyrichalasin H ( PyriH ) and 19,20‐epoxycytochalasin C ( EpoxyCytoC ) are reported. Guided by molecular docking, the C 21‐OAc moiety is identified as a promising site for tag attachment without disrupting actin binding. Semisynthetic modifications enable the conjugation of different dyes to PyriH and EpoxyCytoC scaffolds. Moreover, the effect of linkers separating cytochalasans and dyes is analyzed. Biological evaluation supplemented by in vitro assays to additionally interrogates their activities on the assembly of pure actin filaments revealing distinct activity profiles. Together, this study compares permeability, cytotoxicity, and actin binding of five novel [11]cytochalasan probes bearing substitutions of the C 21‐OAc moiety. These findings establish the C 21‐OAc position as a versatile functionalization site and provide a framework for developing next generation cytochalasan‐based actin‐targeting probes.