Heavy metal elements in farmland soil can be absorbed by crops and endanger food security. To assess the risk of heavy metal elements in farmland soil to crops in Shaanxi Province, we collected 693 soil samples and analyzed the concentrations of nine heavy metals (As, Hg, Pb, Cd, Cr, Mn, Cu, Zn, and Ni). According to the National Standard (GB 15619-2018) of the People’s Republic of China, the proportions of soil sample points in which the concentration of heavy metals was higher than the risk screening value were 2.02% (Cd), 0.29% (Cr), 0.29% (Zn), 2.31% (Cu), 1.15% (Ni), and 0.14% (Pb). The proportions of areas in which the concentration of heavy metal was higher than the background value were as follows, from largest to smallest: Zn (53.20%) > Mn (49.86%) > Cd (29.51%) > Hg (26.77%) > As (26.58%) > Ni (14.95%) > Cu (13.90%) > Pb (6.49%) > Cr (1.40%). The assessment of the risk of heavy metal exposure (geo-accumulation index (I_geo), pollution load index (PLI), and potential ecological risk index (RI)) determined that Hg was the most concerning heavy metal in the farmland soil of Shaanxi Province. Moreover, 11.56% of these areas had Hg contamination, and they were mainly distributed in the western Guanzhong region. The farmland soil in the Guanzhong region was the most contaminated, followed by the southern Shaanxi region and then the northern Shaanxi region. The main sources of heavy metal contamination causing large-scale farmland soil pollution are agricultural production activities, transportation, and air pollution caused by coal combustion in Shaanxi Province. Therefore, sustainable strategies for the prevention and control of heavy metal pollution and agricultural development must be applied in different regions. Heavy metal pollution should be managed, and relevant policies should be created and enforced, such as the standardization of the use of qualified pesticides and fertilizers, improved treatment of livestock and poultry manure, development of the clean energy industry structure, and promotion of renewable energy vehicles. In terms of the high-quality development of agriculture, developing modern and local agriculture in different regions should be based on local geographical, climatic, and economic conditions.