Marek Minarik

Prof. Dr. Marek Minarik

1. Elphogene, Prague, Czech Republic
+1
orcid

Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 June 2014 in Human Mutation
Verified
Journal Article
Open access
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KBKaye N. Ballantyne
Kaye N. Ballantyne
ARArwin Ralf
Arwin Ralf
RARachid Aboukhalid
Rachid Aboukhalid
NANiaz M. Achakzai
Niaz M. Achakzai
MAMaria J. Anjos
Maria J. Anjos
Manfred KayserManfred Kayser
Manfred Kayser
Relevant for various areas of human genetics, Y‐chromosomal short tandem repeats (Y‐STRs) are commonly used for testing close paternal relationships among individuals and populations, and for male lineage identification. However, even the widely used 17‐loci Yfiler set cannot resolve individuals and populations completely. Here, 52 centers generated quality‐controlled data of 13 rapidly mutating (RM) Y‐STRs in 14,644 related and unrelated males from 111 worldwide populations. Strikingly, >99% of the 12,272 unrelated males were completely individualized. Haplotype diversity was extremely high (global: 0.9999985, regional: 0.99836–0.9999988). Haplotype sharing between populations was almost absent except for six (0.05%) of the 12,156 haplotypes. Haplotype sharing within populations was generally rare (0.8% nonunique haplotypes), significantly lower in urban (0.9%) than rural (2.1%) and highest in endogamous groups (14.3%). Analysis of molecular variance revealed 99.98% of variation within populations, 0.018% among populations within groups, and 0.002% among groups. Of the 2,372 newly and 156 previously typed male relative pairs, 29% were differentiated including 27% of the 2,378 father–son pairs. Relative to Yfiler, haplotype diversity was increased in 86% of the populations tested and overall male relative differentiation was raised by 23.5%. Our study demonstrates the value of RM Y‐STRs in identifying and separating unrelated and related males and provides a reference database.

1 February 2013 in Analytical Biochemistry
Verified
Journal Article
Closed access
LBLucie Benesova
Lucie Benesova
BBB. Belsanova
B. Belsanova
SSStepan Suchanek
Stepan Suchanek
MKM. Kopeckova
M. Kopeckova
PMP. Minarikova
P. Minarikova
MMMarek Minarik
Marek Minarik

1 January 2007 in World Journal of Gastroenterology
Verified
Journal Article
Open access
CŠCyril Šálek
Cyril Šálek
LBL Benesova
L Benesova
MZM Zavoral
M Zavoral
VNV Nosek
V Nosek
LKL Kasperova
L Kasperova
MMMarek Minarik
Marek Minarik
To establish an optimum combination of molecular markers resulting in best overall diagnostic sensitivity and specificity for evaluation of suspicious pancreatic mass. Endoscopic ultrasound (EUS)-guided fine needle aspiration cytology (FNA) was performed on 101 consecutive patients (63 males, 38 females, 60 +/- 12 years; 81 with subsequently diagnosed pancreatic cancer, 20 with chronic pancreatitis) with focal pancreatic mass. Samples were evaluated on-site by an experienced cytopathologist. DNA was extracted from Giemsa stained cells selected by laser microdissection and the presence of K-ras, p53 and p16 somatic mutations was tested by cycling-gradient capillary electrophoresis (CGCE) and single-strand conformation polymorphism (SSCP) techniques. In addition, allelic losses of tumor suppressor genes p16 (INK4, CDKN2A) and DPC4 (MADH4, SMAD4) were detected by monitoring the loss of heterozygosity (LOH) at 9p and 18q, respectively. Sensitivity and specificity of EUS-guided FNA were 75% and 85%, positive and negative predictive value reached 100%. The remaining 26% samples were assigned as inconclusive. Testing of molecular markers revealed sensitivity and specificity of 70% and 100% for K-ras mutations (P < 0.001), 24% and 90% for p53 mutations (NS), 13% and 100% for p16 mutations (NS), 85% and 64% for allelic losses at 9p (P < 0.001) and 78% and 57% for allelic losses at 18q (P < 0.05). When tests for different molecular markers were combined, the best results were obtained with K-ras + LOH at 9p (92% and 64%, P < 0.001), K-ras + LOH at 18q (92% and 57%, P < 0.001), and K-ras + LOH 9q + LOH 18q (96% and 43%, P < 0.001). When the molecular markers were used as complements to FNA cytology to evaluate inconclusive samples only, the overall sensitivity of cancer detection was 100% in all patients enrolled in the study. EUS-guided FNA cytology combined with screening of K-ras mutations and allelic losses of tumor suppressors p16 and DPC4 represents a very sensitive approach in screening for pancreatic malignancy. Molecular markers may find its use particularly in cases where FNA cytology has been inconclusive.

1 January 2016 in Neoplasma
Verified
Journal Article
Closed access
OFO. Fiala
O. Fiala
MPM. Pesek
M. Pesek
JFJ. Finek
J. Finek
JRJ. Racek
J. Racek
MMMarek Minarik
Marek Minarik
OTO. Topolcan
O. Topolcan
Serum albumin is a strong predictor of survival of Non Small Cell Lung patients treated in advanced stage with erlotinib

1 October 2016 in Gastrointestinal Endoscopy
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Journal Article
Closed access
RRRudolf Repak
Rudolf Repak
DKDarina Kohoutova
Darina Kohoutova
MPMiroslav Podhola
Miroslav Podhola
SRStanislav Rejchrt
Stanislav Rejchrt
MMMarek Minarik
Marek Minarik
JBJan Bures
Jan Bures

1 January 2013 in Cancer Genetics
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Journal Article
Closed access
Ondrej FialaOndrej Fiala
Ondrej Fiala
MPMilos Pesek
Milos Pesek
JFJindrich Finek
Jindrich Finek
LBLucie Benesova
Lucie Benesova
BBBarbora Belsanova
Barbora Belsanova
MMMarek Minarik
Marek Minarik