Chinmayi Prasanna

Dr. Chinmayi Prasanna

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Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 March 2015 in BioMed Research International
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Journal Article
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VBVarsha P. Brahmkhatri
Varsha P. Brahmkhatri
CPChinmayi Prasanna
Chinmayi Prasanna
HAHanudatta S Atreya
Hanudatta S Atreya
Insulin-like growth factors (IGFs) are essential for growth and survival that suppress apoptosis and promote cell cycle progression, angiogenesis, and metastatic activities in various cancers. The IGFs actions are mediated through the IGF-1 receptor that is involved in cell transformation induced by tumour. These effects depend on the bioavailability of IGFs, which is regulated by IGF binding proteins (IGFBPs). We describe here the role of the IGF system in cancer, proposing new strategies targeting this system. We have attempted to expand the general viewpoint on IGF-1R, its inhibitors, potential limitations of IGF-1R, antibodies and tyrosine kinase inhibitors, and IGFBP actions. This review discusses the emerging view that blocking IGF via IGFBP is a better option than blocking IGF receptors. This can lead to the development of novel cancer therapies.

20 August 2021 in Nature Communications
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Journal Article
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MSMuhammad Shoaib
Muhammad Shoaib
QCQinming Chen
Qinming Chen
XSXiangyan Shi
Xiangyan Shi
NNNidhi Nair
Nidhi Nair
CPChinmayi Prasanna
Chinmayi Prasanna
Claus SørensenClaus Sørensen
Claus Sørensen
Histone lysine methylations have primarily been linked to selective recruitment of reader or effector proteins that subsequently modify chromatin regions and mediate genome functions. Here, we describe a divergent role for histone H4 lysine 20 mono-methylation (H4K20me1) and demonstrate that it directly facilitates chromatin openness and accessibility by disrupting chromatin folding. Thus, accumulation of H4K20me1 demarcates highly accessible chromatin at genes, and this is maintained throughout the cell cycle. In vitro, H4K20me1-containing nucleosomal arrays with nucleosome repeat lengths (NRL) of 187 and 197 are less compact than unmethylated (H4K20me0) or trimethylated (H4K20me3) arrays. Concordantly, and in contrast to trimethylated and unmethylated tails, solid-state NMR data shows that H4K20 mono-methylation changes the H4 conformational state and leads to more dynamic histone H4-tails. Notably, the increased chromatin accessibility mediated by H4K20me1 facilitates gene expression, particularly of housekeeping genes. Altogether, we show how the methylation state of a single histone H4 residue operates as a focal point in chromatin structure control. While H4K20me1 directly promotes chromatin openness at highly transcribed genes, it also serves as a stepping-stone for H4K20me3-dependent chromatin compaction.

6 July 2018 in Angewandte Chemie International Edition
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XSXiangyan Shi
Xiangyan Shi
CPChinmayi Prasanna
Chinmayi Prasanna
TNToshio Nagashima
Toshio Nagashima
TYToshio Yamazaki
Toshio Yamazaki
KPKonstantin Pervushin
Konstantin Pervushin
LNLars Nordenskiöld
Lars Nordenskiöld

30 October 2020 in Communications Biology
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XSXiangyan Shi
Xiangyan Shi
CPChinmayi Prasanna
Chinmayi Prasanna
ASAghil Soman
Aghil Soman
KPKonstantin Pervushin
Konstantin Pervushin
LNLars Nordenskiöld
Lars Nordenskiöld
The dynamics of eukaryotic nucleosomes are essential in gene activity and well regulated by various factors. Here, we elucidated the internal dynamics at multiple timescales for the human histones hH3 and hH4 in the Widom 601 nucleosome core particles (NCP), suggesting that four dynamic networks are formed by the residues exhibiting larger-scale μs-ms motions that extend from the NCP core to the histone tails and DNA. Furthermore, despite possessing highly conserved structural features, histones in the telomeric NCP exhibit enhanced μs-ms dynamics in the globular sites residing at the identified dynamic networks and in a neighboring region. In addition, higher mobility was observed for the N-terminal tails of hH3 and hH4 in the telomeric NCP. The results demonstrate the existence of dynamic networks in nucleosomes, through which the center of the core regions could interactively communicate with histone tails and DNA to potentially propagate epigenetic changes.

1 January 2015
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Book Chapter
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CPChinmayi Prasanna
Chinmayi Prasanna
Abhinav DubeyAbhinav Dubey
Abhinav Dubey
HAHanudatta S. Atreya
Hanudatta S. Atreya

24 June 2023 in Communications Biology
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XSXiangyan Shi
Xiangyan Shi
BKBhuvaneswari Kannaian
Bhuvaneswari Kannaian
CPChinmayi Prasanna
Chinmayi Prasanna
ASAghil Soman
Aghil Soman
LNLars Nordenskiöld
Lars Nordenskiöld
H2A-H2B dimer is a key component of nucleosomes and an important player in chromatin biology. Here, we characterized the structure and dynamics of H2B in precipitated nucleosome core particles (NCPs) with a physiologically relevant concentration using solid-state NMR. Our recent investigation of H3-H4 tetramer determined its unique dynamic properties and the present work provides a deeper understanding of the previously observed dynamic networks in NCP that is potentially functionally significant. Nearly complete 13C, 15N assignments were obtained for H2B R30-A121, which permit extracting unprecedented detailed structural and amino-acid site-specific dynamics. The derived structure of H2B in the well-hydrated NCP sample agrees well with that of X-ray crystals. Dynamics at different timescales were determined semi-quantitatively for H2B in a site-specific manner. Particularly, higher millisecond-microsecond dynamics are observed for H2B core regions including partial α1, L1, partial α2, and partial L3. The analysis of these regions in the context of the tertiary structure reveals the clustering of dynamical residues. Overall, this work fills a gap to a complete resonance assignment of all four histones in nucleosomes and delineates that the dynamic networks in NCP extend to H2B, which suggests a potential mechanism to couple histone core with distant DNA to modulate the DNA activities.