Xiaodan Yu

Dr. Xiaodan Yu

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2015 in Cryptogamie, Mycologie
Verified
Journal Article
Closed access
SASlavomir Adamcik
Slavomir Adamcik
Lei CaiLei Cai
Lei Cai
DCDyutiparna Chakraborty
Dyutiparna Chakraborty
XCXu-Hui Chen
Xu-Hui Chen
HCH. Van T. Cotter
H. Van T. Cotter
BBBart Buyck
Bart Buyck
The authors describe ten new taxa for science using mostly both morphological and molecular data. In Ascomycota, descriptions are provided for Bambusistroma didymosporum gen. et spec. nov. (Pleosporales), Neodeightonia licuriensis sp. nov. (Botryosphaeriales) and Camposporium himalayanum sp. nov. (Fungi imperfecti). In Zygomycota, Gongronella guangdongensis sp. nov. (Mucorales) is described. Finally, in Basidiomycota descriptions are provided for Boidinia parva sp. nov. and Russula katarinae sp. nov. (Russsulales), Gloiocephala parvinelumbonifolia sp. nov. (Agaricales), Hypochnicium austrosinensis sp. nov. (Polyporales), Phallus ultraduplicatus sp. nov. (Phallales) and Suillus lariciphilus sp. nov. (Boletales).

12 September 2022 in Frontiers in Microbiology
Verified
Journal Article
Open access
LWLiu Wei-Ye
Liu Wei-Ye
GHGuo Hong-Bo
Guo Hong-Bo
BKBi Ke-Xin
Bi Ke-Xin
SASibirina Lidiya Alekseevna
Sibirina Lidiya Alekseevna
QXQi Xiao-Jian
Qi Xiao-Jian
XYXiaodan Yu
Xiaodan Yu
Artificial cultivation of Morchella sextelata and other morels is expanding in China, but continuous cropping reduces Morchella for unknown reasons. Here, we investigated soil that had been used or not used for M. sextelata cultivation for 0, 1, and 2 years. We found that the continuous cropping of M. sextelata substantially reduced the pH and the nutrient content of the hyphosphere soil and increased sclerotia formation by M. sextelata. Changes in the structure of bacterial and fungal communities were associated with levels of available nitrogen (N) and phosphorus in the soil. With continuous cropping, the richness and diversity of fungal and bacterial communities increased, but the abundance of Bacillus and Lactobacillus decreased and the abundance of pathogenic fungi increased. FAPROTAX analysis indicated that N cycle functions were enriched more with than without continuous cultivation, and that enrichment of N cycle and sulfate respiration functions was higher in the second than in the first year of cultivation. FunGuild analysis indicated that the functions related to pathotrophs and wood saprotrophs were enriched by M. sextelata cultivation. Overall, the results suggest that continuous cropping may reduce M. sextelata production by acidifying the soil and increasing the abundance of pathogenic fungi. Additional research is needed to determine whether increases in the abundance of pathogenic fungi and changes in soil chemistry result in the declines in production that occur with continuous M. sextelata cultivation.

2 January 2017 in Mycologia
Verified
Journal Article
Closed access
JLJia-Jia Li
Jia-Jia Li
SWShuang-Yan Wu
Shuang-Yan Wu
XYXiaodan Yu
Xiaodan Yu
SZShao-Bin Zhang
Shao-Bin Zhang
DCDong-Xu Cao
Dong-Xu Cao
Three new species, Calocybe aurantiaca, C. convexa, and C. decolorata, are described based on collections made in Shenyang City, Liaoning Province, China. The main characters of C. aurantiaca are its orange-yellow sporocarps and small and smooth basidiospores. Calocybe convexa is characterized by its orange-buff pileus, very small basidiospores, and tortuous stipe, whereas C. decolorata is mainly characterized by its gills that turn blue when bruised. The sequences of nuc rDNA ITS1-5.8S-ITS2 (ITS) and the 28S D1–D5 region of the Calocybe species were analyzed, and the results indicated that the three new species belonged to the genus Calocybe and differed from other species of Calocybe. The morphological similarities of the new species to other Calocybe species and the classification system within the genus Calocybe based on molecular data are also discussed. A key is provided for the Calocybe species as reported from China in order to facilitate future studies of the genus.

20 April 2022 in Diversity
Verified
Journal Article
Open access
PDF file
YMYunrui Ma
Yunrui Ma
TLTiezhi Liu
Tiezhi Liu
XYXiaodan Yu
Xiaodan Yu
TWTie-Zheng Wei
Tie-Zheng Wei
Zai-Wei GeZai-Wei Ge
Zai-Wei Ge
Six new species, Leucoagaricus albosquamosus, Leucoagaricus atroviridis, Leucoagaricus aurantioruber, Leucoagaricus candidus, Leucoagaricus centricastaneus and Leucoagaricus virens, collected from northeastern China are described based on morphological characters and molecular evidence. Illustrations of fresh basidiomata and line drawings of key anatomical characters are provided. A phylogenetic tree inferred from internal transcribed spacer (ITS) region and large subunit ribosomal RNA gene (LSU) sequences shows that three of the new taxa are nested within the section Leucoagaricus and two of the new taxa are in the subgenus Sericeomyces, whereas the other new taxus is clustered with Leucoagaricus viriditinctus and Leucoagaricus irinellus, forming a clade that does not fit in any known section.

27 March 2024 in Frontiers in Microbiology
Verified
Journal Article
Open access
PDF file
HGHongbo Guo
Hongbo Guo
WLWeiye Liu
Weiye Liu
YXYuqi Xie
Yuqi Xie
ZWZhenyu Wang
Zhenyu Wang
CHChentong Huang
Chentong Huang
LSLidiya Alekseevna Sibirina
Lidiya Alekseevna Sibirina
Tricholoma bakamatsutake is a delicious and nutritious ectomycorrhizal fungus. However, its cultivation is hindered owing to limited studies on its symbiotic relationships. The symbiotic relationship between T. bakamatsutake and its host is closely related to the shiro, a complex network composed of mycelium, mycorrhizal roots, and surrounding soil. To explore the symbiotic relationship between T. bakamatsutake and its host, soil samples were collected from T. bakamatsutake shiro (Tb) and corresponding Q. mongolica rhizosphere (CK) in four cities in Liaoning Province, China. The physicochemical properties of all the soil samples were then analyzed, along with the composition and function of the fungal and bacterial communities. The results revealed a significant increase in total potassium, available nitrogen, and sand in Tb soil compared to those in CK soil, while there was a significant decrease in pH, total nitrogen, total phosphorus, available phosphorus, and silt. The fungal community diversity in shiro was diminished, and T. bakamatsutake altered the community structure of its shiro by suppressing other fungi, such as Russula (ectomycorrhizal fungus) and Penicillium (phytopathogenic fungus). The bacterial community diversity in shiro increased, with the aggregation of mycorrhizal-helper bacteria, such as Paenibacillus and Bacillus, and plant growth-promoting bacteria, such as Solirubrobacter and Streptomyces, facilitated by T. bakamatsutake. Microbial functional predictions revealed a significant increase in pathways associated with sugar and fat catabolism within the fungal and bacterial communities of shiro. The relative genetic abundance of carboxylesterase and gibberellin 2-beta-dioxygenase in the fungal community was significantly increased, which suggested a potential symbiotic relationship between T. bakamatsutake and Q. mongolica. These findings elucidate the microbial community and relevant symbiotic environment to better understand the relationship between T. bakamatsutake and Q. mongolica.

15 July 2019 in PeerJ
Verified
Journal Article
Open access
SWSiyu Wang
Siyu Wang
HGHongbo Guo
Hongbo Guo
JLJiaJia Li
JiaJia Li
WLWei Li
Wei Li
QWQin Wang
Qin Wang
XYXiaodan Yu
Xiaodan Yu
Background: Distinguishing among species in the genus Lepista is difficult because of their similar morphologies. Methods: To identify a suitable DNA barcode for identification of Lepista species, we assessed the following five regions: internal transcribed spacer (ITS), the intergenic spacer (IGS), nuclear ribosomal RNA subunit, mitochondria) small subunit rDNA, and tefl. A total of 134 sequences from 34 samples belong to eight Lepista species were analyzed. The utility of each region as a DNA barcode was assessed based on the success rates of its PCR amplification and sequencing, and on its intra- and inter-specific variations. Results: The results indicated that the ITS region could distinguish all species tested. We therefore propose that the ITS region can be used as a DNA barcode for the genus Lepista. In addition, a phylogenetic tree based on the ITS region showed that the tested eight Lepista species, including two unrecognized species, formed eight separate and well-supported clades.