The mechanisms underlying groundwater microbial community assembly have long attracted attention in earth, environmental, and ecological studies. Nevertheless, limited knowledge is available regarding microbial community assembly within the intact groundwater flow systems in arid regions. In this study, long-term hydrochemical data and microbial community profiles were integrated to unravel the assembly processes and driving forces mediating microbial communities in the Golmud River watershed. Our results indicated that hydrochemical conditions gradually transitioned from oxidizing to reducing environments along the groundwater flow path, as evidenced by a 28.57% and 65.45% decrease in DO and ORP, respectively. Major ions, represented by TDS, displayed minimal variations in phreatic (519.72 ± 16.83 mg/L) and artesian groundwater (486.01 ± 27.71 mg/L), followed by pronounced enrichment in high-salinity groundwater (TDS: 316,112.74 ± 12,452.19 mg/L). Gammaproteobacteria and Actinobacteria declined markedly from phreatic (51.69 ± 6.83% and 9.54 ± 3.40%, respectively) to high-salinity groundwater (13.97 ± 3.70% and 4.77 ± 2.46%). Conversely, halophiles such as Halobacteria and Parcubacteria were rarely detected in low-TDS groundwater, but increased sharply in high-salinity groundwater, reaching 23.22 ± 10.42% and 8.34 ± 3.71%, respectively. Deterministic processes primarily controlled groundwater microbial communities across hydrochemical conditions (relative importance > 50%, NST index < 50%). Microbial co-occurrence networks revealed increasingly tight interactions and intensified competition among communities, driven by accumulated salinity–oxygen stress along the groundwater flow path. This study emphasizes the role of deterministic processes in shaping groundwater microbial community structure, particularly the impact of salinity–oxygen stress. Our findings advance the current understanding of the mechanisms by which hydrochemical processes shape groundwater microbial assemblages.

The hydrochemical characteristics and evolution mechanisms of groundwater are critical for accurately understanding the input–output budget of hydrochemical constituents in pristine groundwater. However, few studies have analyzed the changes in mineral precipitation and dissolution equilibrium along the groundwater flow path, especially in arid regions. This study integrated hydrochemical analysis, stable isotopes, and inverse hydrochemical modeling to identify groundwater recharge sources, hydrochemical evolution, and controlling mechanisms in an arid endorheic watershed, northwestern China. A stable isotope signature indicated that groundwater is primarily recharged by high-altitude meteoric precipitation and glacial snowmelt. The regional hydrochemical type evolved from HCO₃·Cl-Ca·Mg·Na types in phreatic aquifers to more complex HCO₃·Cl-Ca·Mg Na and HCO₃·Cl-Na Mg types in confined aquifers and a Cl-Mg·Na type in high-salinity groundwater. The dissolution of halite, gypsum, calcite, K-feldspar, and albite was identified as the primary source of dissolved substances and a key factor controlling the hydrochemical characteristics. Meanwhile, hydrochemical evolution is influenced by cation exchange, mineral dissolution–precipitation, and carbonate equilibrium mechanisms. Inverse hydrochemical modeling demonstrated that high-salinity groundwater has experienced intensive evaporation and quantified the transfer amounts of associated minerals. This study offers deeper insight into hydrochemical evolution in the Golmud River watershed and elucidates mineral transport and enrichment mechanisms, providing a theoretical basis for investigating hydrochemical metallogenic processes.