Shaikh Mohd Kashif

Dr. Shaikh Mohd Kashif

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Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 July 2019 in Biotechnology for Biofuels
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SKShaikh Mohd Kashif
Shaikh Mohd Kashif
ANAsha Arumugam Nesamma
Asha Arumugam Nesamma
MAMalik Zainul Abdin
Malik Zainul Abdin
Pannaga Pavan JUTURPannaga Pavan JUTUR
Pannaga Pavan JUTUR
Decreasing fossil fuels and its impact on global warming have led to an increasing demand for its replacement by sustainable renewable biofuels. Microalgae may offer a potential feedstock for renewable biofuels capable of converting atmospheric CO2 to substantial biomass and valuable biofuels, which is of great importance for the food and energy industries. Parachlorella kessleri, a marine unicellular green alga belonging to class Trebouxiophyceae, accumulates large amount of lipids under nutrient-deprived conditions. The present study aims to understand the metabolic imprints in order to elucidate the physiological mechanisms of lipid accumulations in this microalga under nutrient deprivation. Molecular profiles were obtained using gas chromatography–mass spectrometry (GC–MS) of P. kessleri subjected to nutrient deprivation. Relative quantities of more than 60 metabolites were systematically compared in all the three starvation conditions. Our results demonstrate that in lipid metabolism, the quantities of neutral lipids increased significantly followed by the decrease in other metabolites involved in photosynthesis, and nitrogen assimilation. Nitrogen starvation seems to trigger the triacylglycerol (TAG) accumulation rapidly, while the microalga seems to tolerate phosphorous limitation, hence increasing both biomass and lipid content. The metabolomic and lipidomic profiles have identified a few common metabolites such as citric acid and 2-ketoglutaric acid which play significant role in diverting flux towards acetyl-CoA leading to accumulation of neutral lipids, whereas other molecules such as trehalose involve in cell growth regulation, when subjected to nutrient deprivation. Understanding the entire system through qualitative (untargeted) metabolome approach in P. kessleri has led to identification of relevant metabolites involved in the biosynthesis and degradation of precursor molecules that may have potential for biofuel production, aiming towards the vision of tomorrow’s bioenergy needs.

28 June 2022 in Marine Drugs
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VVValeria Villanova
Valeria Villanova
Christian GalassoChristian Galasso
Christian Galasso
Giovanni Andrea VitaleGiovanni Andrea Vitale
Giovanni Andrea Vitale
GSGerardo Della Sala
Gerardo Della Sala
JEJohan Engelbrektsson
Johan Engelbrektsson
CSCornelia Spetea
Cornelia Spetea
A local strain of Nannochloropsis granulata (Ng) has been reported as the most productive microalgal strain in terms of both biomass yield and lipid content when cultivated in photobioreactors that simulate the light and temperature conditions during the summer on the west coast of Sweden. To further increase the biomass and the biotechnological potential of this strain in these conditions, mixotrophic growth (i.e., the simultaneous use of photosynthesis and respiration) with glycerol as an external carbon source was investigated in this study and compared with phototrophic growth that made use of air enriched with 1–2% CO2. The addition of either glycerol or CO2-enriched air stimulated the growth of Ng and theproduction of high-value long-chain polyunsaturated fatty acids (EPA) as well as the carotenoid canthaxanthin. Bioassays in human prostate cell lines indicated the highest antitumoral activity for Ng extracts and fractions from mixotrophic conditions. Metabolomics detected betaine lipids specifically in the bioactive fractions, suggesting their involvement in the observed antitumoral effect. Genes related to autophagy were found to be upregulated by the most bioactive fraction, suggesting a possible therapeutic target against prostate cancer progression. Taken together, our results suggest that the local Ng strain can be cultivated mixotrophically in summer conditions on the west coast of Sweden for the production of high-value biomass containing antiproliferative compounds, carotenoids, and EPA.

20 June 2023 in bioRxiv
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LALiat Adler
Liat Adler
CLChun Sing Lau
Chun Sing Lau
SKShaikh Mohd Kashif
Shaikh Mohd Kashif
KMKim A. van Maldegem
Kim A. van Maldegem
APAlex L. Payne-Dwyer
Alex L. Payne-Dwyer
CWCharlotte E. Walker
Charlotte E. Walker
In many eukaryotic algae, CO2 fixation by Rubisco is enhanced by a CO2- concentrating mechanism, which utilizes a Rubisco-rich organelle called the pyrenoid. The pyrenoid is traversed by a network of thylakoid-membranes called pyrenoid tubules, proposed to deliver CO2. In the model alga Chlamydomonas reinhardtii ( Chlamydomonas ), the pyrenoid tubules have been proposed to be tethered to the Rubisco matrix by a bestrophin-like transmembrane protein, BST4. Here, we show that BST4 forms a complex that localizes to the pyrenoid tubules. A Chlamydomonas mutant impaired in the accumulation of BST4 ( bst4 ) formed normal pyrenoid tubules and heterologous expression of BST4 in Arabidopsis thaliana did not lead to the incorporation of thylakoids into a reconstituted Rubisco condensate. Chlamydomonas bst4 mutant did not show impaired growth at air level CO2. By quantifying the non-photochemical quenching ( NPQ ) of chlorophyll fluorescence, we show that bst4 displays a transiently lower thylakoid lumenal pH during dark to light transition compared to control strains. When acclimated to high light, bst4 had sustained higher NPQ and elevated levels of light-induced H2O2 production. We conclude that BST4 is not a tethering protein, but rather is an ion channel involved in lumenal pH regulation possibly by mediating bicarbonate transport across the pyrenoid tubules. One-sentence summary: In Chlamydomonas, the pyrenoid-localized bestrophin-like protein BST4 is a putative ion channel involved in pH regulation of the thylakoid lumen, possibly by mediating bicarbonate transport.

24 April 2025 in Plant Physiology
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Journal Article
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SKShaikh Mohd Kashif
Shaikh Mohd Kashif
CWCharlotte E Walker
Charlotte E Walker
DTDávid Tóth
Dávid Tóth
SKSoujanya Kuntam
Soujanya Kuntam
TPTamas Ferenc Polgar
Tamas Ferenc Polgar
CSCornelia Spetea
Cornelia Spetea
Phosphate (Pi) is essential for photosynthesis in the chloroplast of algae and plants. Pi homeostasis in the chloroplast is maintained by transporters from several families, whose identities in algae are largely unknown as compared with land plants. Here, we assess the role of the putative PHOSPHATE TRANSPORTER 4-9 from Chlamydomonas reinhardtii (CrPHT4-9) in maintaining chloroplast Pi homeostasis and modulating photosynthesis. Based on phylogenetic analyses and heterologous expression in a yeast (Saccharomyces cerevisiae) strain lacking Pi transporters, we demonstrate that CrPHT4-9 is a Pi transporter closely related to the chloroplast members of the PHT4 family in Arabidopsis (Arabidopsis thaliana). CrPHT4-9 is localized within the chloroplast, more specifically in the thylakoid membrane network and the tubules traversing the CO2-fixing pyrenoid. Two mutants lacking CrPHT4-9 (Crpht4-9) exhibit defective photoautotrophic growth, altered cell morphology and chloroplast ultrastructure under CO2-limiting conditions. In the Crpht4-9 mutants, we further show an increased proton motive force across the thylakoid membrane, enhanced energy- and state-transition-dependent non-photochemical quenching of chlorophyll a fluorescence, and diminished photosynthetic electron transport and ATP synthase activity. The Crpht4-9 mutants exhibit reduced affinity to inorganic carbon, indicating an impaired carbon-concentrating mechanism. These phenotypes are largely recovered by genetic complementation as well as by ample CO2 supply and, interestingly, by Pi deprivation. Therefore, we conclude that the thylakoid- and pyrenoid-localized CrPHT4-9 maintains Pi homeostasis within the chloroplast and is essential for photosynthesis and growth.

31 March 2025 in bioRxiv
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NPNia Petrova
Nia Petrova
SKSoujanya Kuntam
Soujanya Kuntam
MSMilan Szabo
Milan Szabo
SKShaikh Mohd Kashif
Shaikh Mohd Kashif
GKGyula Kajner
Gyula Kajner
Szilvia Z. TothSzilvia Z. Toth
Szilvia Z. Toth
Exoelectrogenesis is the ability of living cells to export electrons. In photosynthetic organisms, exoelectrogenesis is of particular interest because it can be used for transduction of solar energy into electric current in biophotovoltaics or reducing power for biocatalysis. Previously, we identified and characterized the green microalga Parachlorella kessleri MACC-38 producing unprecedented current largely dependent on the photosynthetic electron transport chain (PETC). In this study, our comparative photosynthetic characterization demonstrates that chlororespiration is a crucial factor maintaining the PETC redox balance in MACC-38. Our data points that the oxidative pentose phosphate pathway (OPPP) is activated during exoelectrogenesis to meet the increased demand of reducing power. We hypothesize that chlororespitration prevents oversaturation of PETC during OPPP activation. These findings provide valuable insights into the fundamental mechanisms of exoelectrogenesis in green algae. By elucidating the complex interconnection between PETC, OPPP and exoelectrogenesis, our results pave the way towards improved bioelectrochemical and biocatalysis technologies.

20 October 2026 in Plant Physiology and Biochemistry
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Journal Article
Open access
NPNia Z. Petrova
Nia Z. Petrova
SKSoujanya Kuntam
Soujanya Kuntam
MSMilan Szabo
Milan Szabo
SKShaikh Mohd Kashif
Shaikh Mohd Kashif
GKGyula Kajner
Gyula Kajner
Szilvia Z. TothSzilvia Z. Toth
Szilvia Z. Toth
Photosynthetic microorganisms enable the conversion of sunlight into electricity via exoelectrogenesis - the export of electrons to the extracellular environment. However, current strategies to enhance this process often rely on nutrient deprivation, such as iron limitation, which inevitably compromises the photosynthetic apparatus and arrests cell growth. Here, we investigate the physiological basis of the inherently enhanced exoelectrogenesis in the green microalga Parachlorella kessleri MACC-38 - a strain that exhibits tenfold higher electric current production than the model alga Chlamydomonas reinhardtii without requiring stress treatments. We propose that upon exposure to ferricyanide as an extracellular electron sink, the oxidative pentose phosphate pathway (OPPP) is upregulated - specifically via glucose-6-phosphate dehydrogenase - to supply NADPH as the primary reducing power for exoelectrogenesis. Furthermore, we suggest that while the OPPP supports electron export, it simultaneously induces a transient over-reduction of the photosynthetic electron transport chain. Our data indicates that chlororespiration, mediated by the plastid terminal oxidase (PTOX), is essential to maintain redox homeostasis by re-oxidizing the plastoquinone pool, while sustaining exoelectrogenesis. These results may find application in the rational design of highly exoelectrogenic microorganisms with synthetic biology tools for sustainable, high-efficiency biophotovoltaic systems.