Angelman Syndrome (AS, MIM #105830) is a rare neurodevelopmental disorder caused by imprinting defects, marked by motor issues, intellectual disability, speech challenges, and seizures. The condition arises due to the loss of function in neurons of the maternally-inherited UBE3A gene, mapping in the imprinted chromosomal region 15q11.2-q13, which is caused by genetic and epigenetic mechanisms. UBE3A encodes an ubiquitin E3 ligase, essential for synaptic plasticity. Most studies on AS have been performed on animal models, while induced pluripotent stem cells (IPSCs), mainly from patients with deletions, are still in a limited number. Here we report on the generation and characterization of human cortical neurons derived from IPSCs of children representative of the main AS genotypes: 3 with 15q11–13 deletion, 4 with UBE3A mutations, 2 with uniparental disomy, and 2 with imprinting defects. During early neuronal differentiation, morphological analyses highlighted a reduced dendritic branching and an increase of thin filopodia, while migration assays revealed a reduction in neurite mobility in AS human neurons with deletion. At a later differentiation timepoint, the study of electrical activity revealed an impairment in neurons from AS patients. Basing of data of literature proving a role of JNK (c-Jun N-terminal kinase) signalling pathway in the filopodia formation and synaptic development, we examined the JNK deregulation in our cellular model. We found increased activation of JNK, and importantly the treatment with a JNK-inhibitor, D-JNKI1, partially corrected the neuronal morphological defects, notably reducing the number of immature protrusions, and defects in electrophysiological properties.