Juan Araya

Dr. Juan Araya

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
19 May 2023 in Frontiers in Endocrinology
Verified
Journal Article
Open access
DMDaniela Mennickent
Daniela Mennickent
ARAndrés Rodríguez
Andrés Rodríguez
MOMa. Cecilia Opazo
Ma. Cecilia Opazo
CRClaudia A. Riedel
Claudia A. Riedel
ECErica Castro
Erica Castro
JAJuan Araya
Juan Araya
Introduction: Machine learning (ML) corresponds to a wide variety of methods that use mathematics, statistics and computational science to learn from multiple variables simultaneously. By means of pattern recognition, ML methods are able to find hidden correlations and accomplish accurate predictions regarding different conditions. ML has been successfully used to solve varied problems in different areas of science, such as psychology, economics, biology and chemistry. Therefore, we wondered how far it has penetrated into the field of obstetrics and gynecology.Aim: To describe the state of art regarding the use of ML in the context of pregnancy diseases and complications.Methodology: Publications were searched in PubMed, Web of Science and Google Scholar. Seven subjects of interest were considered: gestational diabetes mellitus, preeclampsia, perinatal death, spontaneous abortion, preterm birth, cesarean section, and fetal malformations.Current state: ML has been widely applied in all the included subjects. Its uses are varied, the most common being the prediction of perinatal disorders. Other ML applications include (but are not restricted to) biomarker discovery, risk estimation, correlation assessment, pharmacological treatment prediction, drug screening, data acquisition and data extraction. Most of the reviewed articles were published in the last five years. The most employed ML methods in the field are non-linear. Except for logistic regression, linear methods are rarely used.Future challenges: To improve data recording, storage and update in medical and research settings from different realities. To develop more accurate and understandable ML models using data from cutting-edge instruments. To carry out validation and impact analysis studies of currently existing high-accuracy ML models.Conclusion: The use of ML in pregnancy diseases and complications is quite recent, and has increased over the last few years. The applications are varied and point not only to the diagnosis, but also to the management, treatment, and pathophysiological understanding of perinatal alterations. Facing the challenges that come with working with different types of data, the handling of increasingly large amounts of information, the development of emerging technologies, and the need of translational studies, it is expected that the use of ML continue growing in the field of obstetrics and gynecology.

24 August 2022 in Artificial Intelligence in Medicine
Verified
Journal Article
Closed access
DMDaniela Mennickent
Daniela Mennickent
ARAndrés Rodríguez
Andrés Rodríguez
MFMarcelo Farías-Jofré
Marcelo Farías-Jofré
JAJuan Araya
Juan Araya
EGEnrique Guzmán-Gutiérrez
Enrique Guzmán-Gutiérrez

Verified
Journal Article
Open access
PDF file
SVSebastián Venegas
Sebastián Venegas
CACarolina Alarcón
Carolina Alarcón
JAJuan Araya
Juan Araya
MGMarcell Gatica
Marcell Gatica
VMVioleta Morin
Violeta Morin
EUElena Amparo Uribe
Elena Amparo Uribe
Galleria mellonella is a lepidopteran whose larval stage has shown the ability to degrade polystyrene (PS), one of the most recalcitrant plastics to biodegradation. In the present study, we fed G. mellonella larvae with PS for 54 days and determined candidate enzymes for its degradation. We first confirmed the biodegradation of PS by Fourier transform infrared spectroscopy- Attenuated total reflectance (FTIR-ATR) and then identified candidate enzymes in the larval gut by proteomic analysis using liquid chromatography with tandem mass spectrometry (LC-MS/MS). Two of these proteins have structural similarities to the styrene-degrading enzymes described so far. In addition, potential hydrolases, isomerases, dehydrogenases, and oxidases were identified that show little similarity to the bacterial enzymes that degrade styrene. However, their response to a diet based solely on polystyrene makes them interesting candidates as a potential new group of polystyrene-metabolizing enzymes in eukaryotes.

21 May 2024 in Biomedicines
Verified
Journal Article
Open access
PDF file
DMDaniela Mennickent
Daniela Mennickent
LRLucas Romero-Albornoz
Lucas Romero-Albornoz
SGSebastián Gutiérrez-Vega
Sebastián Gutiérrez-Vega
Claudio AguayoClaudio Aguayo
Claudio Aguayo
Federico MariniFederico Marini
Federico Marini
JAJuan Araya
Juan Araya
Gestational diabetes mellitus (GDM) is a hyperglycemic state that is typically diagnosed by an oral glucose tolerance test (OGTT), which is unpleasant, time-consuming, has low reproducibility, and results are tardy. The machine learning (ML) predictive models that have been proposed to improve GDM diagnosis are usually based on instrumental methods that take hours to produce a result. Near-infrared (NIR) spectroscopy is a simple, fast, and low-cost analytical technique that has never been assessed for the prediction of GDM. This study aims to develop ML predictive models for GDM based on NIR spectroscopy, and to evaluate their potential as early detection or alternative screening tools according to their predictive power and duration of analysis. Serum samples from the first trimester (before GDM diagnosis) and the second trimester (at the time of GDM diagnosis) of pregnancy were analyzed by NIR spectroscopy. Four spectral ranges were considered, and 80 mathematical pretreatments were tested for each. NIR data-based models were built with single- and multi-block ML techniques. Every model was subjected to double cross-validation. The best models for first and second trimester achieved areas under the receiver operating characteristic curve of 0.5768 ± 0.0635 and 0.8836 ± 0.0259, respectively. This is the first study reporting NIR-spectroscopy-based methods for the prediction of GDM. The developed methods allow for prediction of GDM from 10 µL of serum in only 32 min. They are simple, fast, and have a great potential for application in clinical practice, especially as alternative screening tools to the OGTT for GDM diagnosis.

1 June 2024 in Food Bioscience
Verified
Journal Article
Closed access
SPSamuel Pérez
Samuel Pérez
RVRodrigo Vasquez
Rodrigo Vasquez
GPGuillermo Pascual
Guillermo Pascual
JAJuan Araya
Juan Araya
JNJosé Neira
José Neira
CCCarlos L. Cespedes-Acuña
Carlos L. Cespedes-Acuña

13 January 2023 in PLOS ONE
Verified
Journal Article
Open access
PDF file
DMDaniela Mennickent
Daniela Mennickent
BOBernel Ortega-Contreras
Bernel Ortega-Contreras
SGSebastián Gutiérrez-Vega
Sebastián Gutiérrez-Vega
ECErica Castro
Erica Castro
ARAndrés Rodríguez
Andrés Rodríguez
EGEnrique Guzmán-Gutiérrez
Enrique Guzmán-Gutiérrez
Maternal thyroid alterations have been widely associated with the risk of gestational diabetes mellitus (GDM). This study aims to 1) test the first and the second trimester full maternal thyroid profile on the prediction of GDM, both alone and combined with non-thyroid data; and 2) make that prediction independent of the diagnostic criteria, by evaluating the effectiveness of the different maternal variables on the prediction of oral glucose tolerance test (OGTT) post load glycemia. Pregnant women were recruited in Concepción, Chile. GDM diagnosis was performed at 24–28 weeks of pregnancy by an OGTT (n = 54 for normal glucose tolerance, n = 12 for GDM). 75 maternal thyroid and non-thyroid parameters were recorded in the first and the second trimester of pregnancy. Various combinations of variables were assessed for GDM and post load glycemia prediction through different classification and regression machine learning techniques. The best predictive models were simplified by variable selection. Every model was subjected to leave-one-out cross-validation. Our results indicate that thyroid markers are useful for the prediction of GDM and post load glycemia, especially at the second trimester of pregnancy. Thus, they could be used as an alternative screening tool for GDM, independently of the diagnostic criteria used. The final classification models predict GDM with cross-validation areas under the receiver operating characteristic curve of 0.867 (p<0.001) and 0.920 (p<0.001) in the first and the second trimester of pregnancy, respectively. The final regression models predict post load glycemia with cross-validation Spearman r correlation coefficients of 0.259 (p = 0.036) and 0.457 (p<0.001) in the first and the second trimester of pregnancy, respectively. This investigation constitutes the first attempt to test the performance of the whole maternal thyroid profile on GDM and OGTT post load glycemia prediction. Future external validation studies are needed to confirm these findings in larger cohorts and different populations.