Henrike Stephani

Dr. Henrike Stephani


Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
6 May 2024 in Microscopy and Microanalysis
Verified
Journal Article
Closed access
PDF file
LNLars Nieradzik
Lars Nieradzik
JSJördis Sieburg-Rockel
Jördis Sieburg-Rockel
SHStephanie Helmling
Stephanie Helmling
JKJanis Keuper
Janis Keuper
TWThomas Weibel
Thomas Weibel
HSHenrike Stephani
Henrike Stephani
We have developed a methodology for the systematic generation of a large image dataset of macerated wood references, which we used to generate image data for nine hardwood genera. This is the basis for a substantial approach to automate, for the first time, the identification of hardwood species in microscopic images of fibrous materials by deep learning. Our methodology includes a flexible pipeline for easy annotation of vessel elements. We compare the performance of different neural network architectures and hyperparameters. Our proposed method performs similarly well to human experts. In the future, this will improve controls on global wood fiber product flows to protect forests.

23 November 2024 in International Journal of Computer Vision
Verified
Journal Article
Open access
PDF file
LNLars Nieradzik
Lars Nieradzik
HSHenrike Stephani
Henrike Stephani
JKJanis Keuper
Janis Keuper
In this paper, we present an approach for evaluating attribution maps, which play a central role in interpreting the predictions of convolutional neural networks (CNNs). We show that the widely used insertion/deletion metrics are susceptible to distribution shifts that affect the reliability of the ranking. Our method proposes to replace pixel modifications with adversarial perturbations, which provides a more robust evaluation framework. By using smoothness and monotonicity measures, we illustrate the effectiveness of our approach in correcting distribution shifts. In addition, we conduct the most comprehensive quantitative and qualitative assessment of attribution maps to date. Introducing baseline attribution maps as sanity checks, we find that our metric is the only contender to pass all checks. Using Kendall’s $$\tau $$ τ rank correlation coefficient, we show the increased consistency of our metric across 15 dataset-architecture combinations. Of the 16 attribution maps tested, our results clearly show SmoothGrad to be the best map currently available. This research makes an important contribution to the development of attribution maps by providing a reliable and consistent evaluation framework. To ensure reproducibility, we will provide the code along with our results.

1 January 2015 in Palaeontologia Electronica
Verified
Journal Article
Open access
PDF file
ELElisabeth Leiss-Holzinger
Elisabeth Leiss-Holzinger
KWKarin Wiesauer
Karin Wiesauer
HSHenrike Stephani
Henrike Stephani
BHBettina Heise
Bettina Heise
DSDavid Stifter
David Stifter
ASAltenberger Strasse
Altenberger Strasse
Imaging of the inner structure of cave bear teeth by novel non-destructive techniques

30 March 2023 in Discover Data
Verified
Journal Article
Open access
PDF file
HSHenrike Stephani
Henrike Stephani
TWThomas Weibel
Thomas Weibel
RRRonald Rösch
Ronald Rösch
AMAli Moghiseh
Ali Moghiseh
Using deep learning in complex online surface inspection systems is challenging due to different framework conditions. First, time restrictions in production are usually fixed in terms of clock rate and response time. Furthermore, these methods need a lot of data, while typically the data situation is thin in the beginning as well as continuously unbalanced: defects occur rarely and thereby providing few example data for learning, while the desired detection rate is 100%. Another important issue is that although defect catalogues exist, they often change, especially when automatic inspection is applied for the first time. This is due to imaging systems usually being able to detect more defects than visual-manual inspection, therefore production, management, and quality assurance usually reiterate their prior defect catalogues. However, data driven methods depend heavily on consistent annotation. Therefore, respective parties must be made aware of this issue on the one hand, on the other hand, annotation and reannotation must be easy and useable by non-experts. Related is the issue of parametrization and traceability. Both are not inherent to neural networks but must be provided to some level to help building trust in machine learning methods. In this paper, we present a quality inspection system that uses deep neural networks for defect detection under real production conditions in wood manufacturing. We will address how we systematically deal with the above issues both in terms of process and algorithm.

30 October 2024 in Forests
Verified
Journal Article
Open access
PDF file
LNLars Nieradzik
Lars Nieradzik
HSHenrike Stephani
Henrike Stephani
JSJördis Sieburg-Rockel
Jördis Sieburg-Rockel
SHStephanie Helmling
Stephanie Helmling
AOAndrea Olbrich
Andrea Olbrich
JKJanis Keuper
Janis Keuper
Wood species identification plays a crucial role in various industries, from ensuring the legality of timber products to advancing ecological conservation efforts. This paper introduces WoodYOLO, a novel object detection algorithm specifically designed for microscopic wood fiber analysis. Our approach adapts the YOLO architecture to address the challenges posed by large, high-resolution microscopy images and the need for high recall in localization of the cell type of interest (vessel elements). Our results show that WoodYOLO significantly outperforms state-of-the-art models, achieving performance gains of 12.9% and 6.5% in F2 score over YOLOv10 and YOLOv7, respectively. This improvement in automated wood cell type localization capabilities contributes to enhancing regulatory compliance, supporting sustainable forestry practices, and promoting biodiversity conservation efforts globally.

18 February 2024 in arXiv
Verified
Preprint
Open access
PDF file
LNLars Nieradzik
Lars Nieradzik
HSHenrike Stephani
Henrike Stephani
JSJördis Sieburg-Rockel
Jördis Sieburg-Rockel
SHStephanie Helmling
Stephanie Helmling
AOAndrea Olbrich
Andrea Olbrich
JKJanis Keuper
Janis Keuper
In this study, we explore the explainability of neural networks in agriculture and forestry, specifically in fertilizer treatment classification and wood identification. The opaque nature of these models, often considered 'black boxes', is addressed through an extensive evaluation of state-of-the-art Attribution Maps (AMs), also known as class activation maps (CAMs) or saliency maps. Our comprehensive qualitative and quantitative analysis of these AMs uncovers critical practical limitations. Findings reveal that AMs frequently fail to consistently highlight crucial features and often misalign with the features considered important by domain experts. These discrepancies raise substantial questions about the utility of AMs in understanding the decision-making process of neural networks. Our study provides critical insights into the trustworthiness and practicality of AMs within the agriculture and forestry sectors, thus facilitating a better understanding of neural networks in these application areas.