Frank Yang

Dr. Frank Yang


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 June 2011 in PLOS Pathogens
Verified
Journal Article
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MHMing He
Ming He
ZOZhiming Ouyang
Zhiming Ouyang
BTBryan Troxell
Bryan Troxell
HXHai-Jun Xu
Hai-Jun Xu
AMAkira Moh
Akira Moh
FYFrank Yang
Frank Yang
Cyclic dimeric GMP (c-di-GMP) is a bacterial second messenger that modulates many biological processes. Although its role in bacterial pathogenesis during mammalian infection has been documented, the role of c-di-GMP in a pathogen's life cycle within a vector host is less understood. The enzootic cycle of the Lyme disease pathogen Borrelia burgdorferi involves both a mammalian host and an Ixodes tick vector. The B. burgdorferi genome encodes a single copy of the diguanylate cyclase gene (rrp1), which is responsible for c-di-GMP synthesis. To determine the role of c-di-GMP in the life cycle of B. burgdorferi, an Rrp1-deficient B. burgdorferi strain was generated. The rrp1 mutant remains infectious in the mammalian host but cannot survive in the tick vector. Microarray analyses revealed that expression of a four-gene operon involved in glycerol transport and metabolism, bb0240-bb0243, was significantly downregulated by abrogation of Rrp1. In vitro, the rrp1 mutant is impaired in growth in the media containing glycerol as the carbon source (BSK-glycerol). To determine the contribution of the glycerol metabolic pathway to the rrp1 mutant phenotype, a glp mutant, in which the entire bb0240-bb0243 operon is not expressed, was generated. Similar to the rrp1 mutant, the glp mutant has a growth defect in BSK-glycerol medium. In vivo, the glp mutant is also infectious in mice but has reduced survival in ticks. Constitutive expression of the bb0240-bb0243 operon in the rrp1 mutant fully rescues the growth defect in BSK-glycerol medium and partially restores survival of the rrp1 mutant in ticks. Thus, c-di-GMP appears to govern a catabolic switch in B. burgdorferi and plays a vital role in the tick part of the spirochetal enzootic cycle. This work provides the first evidence that c-di-GMP is essential for a pathogen's survival in its vector host. The Lyme disease pathogen Borrelia burgdorferi has two sets of two-component systems, Hk1-Rrp1 and Hk2-Rrp2. The Hk2-Rrp2 signaling system has been shown to modulate differential expression of numerous surface lipoprotein genes and to play an essential role in spirochete transformation from a tick colonizer to a mammalian host-adapted state. In this study, we show that Rrp1, the only diguanylate cyclase in B. burgdorferi, is not required for mammalian infection but is essential for spirochete survival in the tick vector. We identify over 39 genes whose expression is influenced by this c-di-GMP signaling system. We further demonstrate that one set of the Rrp1-dependent genes, the glp operon for glycerol transport and metabolism, plays an important role in the spirochete adaptation to tick environment and partially accounts for the essentiality of c-di-GMP for B. burgdorferi survival in ticks.

1 September 2008 in Infection and Immunity
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Journal Article
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BBBethany K. Boardman
Bethany K. Boardman
MHMing He
Ming He
ZOZhiming Ouyang
Zhiming Ouyang
HXHai-Jun Xu
Hai-Jun Xu
XPXiujuan Pang
Xiujuan Pang
FYFrank Yang
Frank Yang
Alteration of surface lipoprotein profiles is a key strategy that the Lyme disease pathogen, Borrelia burgdorferi , has evolved to be maintained within its enzootic cycle between arthropods and mammals. Accumulated evidence indicates that the central regulatory pathway controlling differential gene expression by B. burgdorferi is the RpoN-RpoS pathway (the σ 54 -σ S sigma factor cascade). It was previously shown that activation of the RpoN-RpoS pathway is controlled by Rrp2, a two-component response regulator and σ 54 -dependent transcriptional activator. The role of Rrp2 in the infectious cycle of B. burgdorferi has not been determined heretofore. In this report, we demonstrate that an rrp2 mutant defective in activating σ 54 -dependent transcription was unable to establish infection in mice, but the rrp2 mutant was capable of surviving within ticks during and after tick feeding. Because the rrp2 mutant was defective in the production of OspC, an outer surface lipoprotein essential for mammalian host infection, we further examined whether the loss of infectivity of the rrp2 mutant was solely due to the inability to produce OspC. While transformation with a shuttle vector carrying ospC under the control of a constitutive flaB promoter restored infection to an ospC mutant in immunodeficient SCID mice, it could not rescue the avirulent phenotype of the rrp2 mutant. These data indicate that, in addition to controlling OspC, Rrp2 controls another factor(s) essential for B. burgdorferi to establish infection in mammals. Furthermore, microarray analyses revealed that 125 and 19 genes were positively and negatively regulated, respectively, by Rrp2, which provides a foundation for future identification of additional Rrp2-dependent virulence determinants in B. burgdorferi .

1 May 2014 in Infection and Immunity
Verified
Journal Article
Open access
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MYMeiping Ye
Meiping Ye
JZJun-Jie Zhang
Jun-Jie Zhang
XFXin Fang
Xin Fang
GLGavin B. Lawlis
Gavin B. Lawlis
BTBryan Troxell
Bryan Troxell
FYFrank Yang
Frank Yang
Cyclic di-AMP (c-di-AMP) is a recently discovered second messenger in bacteria. Most of work on c-di-AMP signaling has been done in Gram-positive bacteria, firmicutes, and actinobacteria, where c-di-AMP signaling pathways affect potassium transport, cell wall structure, and antibiotic resistance. Little is known about c-di-AMP signaling in other bacteria.Borrelia burgdorferi, the causative agent of Lyme disease, is a spirochete that has a Gram-negative dual membrane. In this study, we demonstrated thatB. burgdorferiBB0619, aDHH-DHHA1 domainprotein (herein designated DhhP), functions as c-di-AMP phosphodiesterase. Recombinant DhhP hydrolyzed c-di-AMP to pApA in a Mn2+- or Mg2+-dependent manner. In contrast to c-di-AMP phosphodiesterases reported thus far, DhhP appears to be essential forB. burgdorferigrowth bothin vitroand in the mammalian host. Inactivation of the chromosomaldhhPgene could be achieved only in the presence of a plasmid-encoded inducibledhhPgene. The conditionaldhhPmutant had a dramatic increase in intracellular c-di-AMP level in comparison to the isogenic wild-type strain. Unlike what has been observed in Gram-positive bacteria, elevated cellular c-di-AMP inB. burgdorferidid not result in an increased resistance to β-lactamase antibiotics, suggesting that c-di-AMP's functions in spirochetes differ from those in Gram-positive bacteria. In addition, thedhhPmutant was defective in induction of the σSfactor, RpoS, and the RpoS-dependent outer membrane virulence factor OspC, which uncovers an important role of c-di-AMP inB. burgdorferivirulence.

1 December 2015 in Infection and Immunity
Verified
Journal Article
Open access
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SCSebastian E Carrasco
Sebastian E Carrasco
BTBryan Troxell
Bryan Troxell
YYYouyun Yang
Youyun Yang
SBStephanie L Brandt
Stephanie L Brandt
HLHongxia Li
Hongxia Li
FYFrank Yang
Frank Yang
Outer surface protein C (OspC) is one of the major lipoproteins expressed on the surface ofBorrelia burgdorferiduring tick feeding and the early phase of mammalian infection. OspC is required forB. burgdorferito establish infection in both immunocompetent and SCID mice and has been proposed to facilitate evasion of innate immune defenses. However, the exact biological function of OspC remains elusive. In this study, we showed that theospC-deficient spirochete could not establish infection in NOD-scid IL2rγnullmice that lack B cells, T cells, NK cells, and lytic complement. TheospCmutant also could not establish infection in anti-Ly6G-treated SCID and C3H/HeN mice (depletion of neutrophils). However, depletion of mononuclear phagocytes at the skin site of inoculation in SCID and C3H/HeN mice allowed theospCmutant to establish infectionin vivo. In phagocyte-depleted mice, theospCmutant was able to colonize the joints and triggered neutrophilia during dissemination. Furthermore, we found that phagocytosis of green fluorescent protein (GFP)-expressingospCmutant spirochetes by murine peritoneal macrophages and human THP-1 macrophage-like cells, but not in PMN-HL60, was significantly higher than parental wild-typeB. burgdorferistrains, suggesting that OspC has an antiphagocytic property. In addition, overproduction of OspC in spirochetes also decreased the uptake of spirochetes by murine peritoneal macrophages. Together, our findings provide evidence that mononuclear phagocytes play a key role in clearance of theospCmutant and that OspC promotes spirochetes' evasion of macrophages during early Lyme borreliosis.

16 September 2010 in PLOS Pathogens
Verified
Journal Article
Open access
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HXHai-Jun Xu
Hai-Jun Xu
MCMelissa J. Caimano
Melissa J. Caimano
TLTao Lin
Tao Lin
MHMing He
Ming He
JRJustin D. Radolf
Justin D. Radolf
FYFrank Yang
Frank Yang
Borrelia burgdorferi, the Lyme disease spirochete, dramatically alters its transcriptome and proteome as it cycles between the arthropod vector and mammalian host. During this enzootic cycle, a novel regulatory network, the Rrp2-RpoN-RpoS pathway (also known as the σ54–σS sigma factor cascade), plays a central role in modulating the differential expression of more than 10% of all B. burgdorferi genes, including the major virulence genes ospA and ospC. However, the mechanism(s) by which the upstream activator and response regulator Rrp2 is activated remains unclear. Here, we show that none of the histidine kinases present in the B. burgdorferi genome are required for the activation of Rrp2. Instead, we present biochemical and genetic evidence that supports the hypothesis that activation of the Rrp2-RpoN-RpoS pathway occurs via the small, high-energy, phosphoryl-donor acetyl phosphate (acetyl∼P), the intermediate of the Ack-Pta (acetate kinase-phosphate acetyltransferase) pathway that converts acetate to acetyl-CoA. Supplementation of the growth medium with acetate induced activation of the Rrp2-RpoN-RpoS pathway in a dose-dependent manner. Conversely, the overexpression of Pta virtually abolished acetate-induced activation of this pathway, suggesting that acetate works through acetyl∼P. Overexpression of Pta also greatly inhibited temperature and cell density-induced activation of RpoS and OspC, suggesting that these environmental cues affect the Rrp2-RpoN-RpoS pathway by influencing acetyl∼P. Finally, overexpression of Pta partially reduced infectivity of B. burgdorferi in mice. Taken together, these findings suggest that acetyl∼P is one of the key activating molecule for the activation of the Rrp2-RpoN-RpoS pathway and support the emerging concept that acetyl∼P can serve as a global signal in bacterial pathogenesis. Borrelia burgdorferi, the causative agent of Lyme disease, is maintained in nature in a complex enzootic cycle involving Ixodes ticks and mammals. A novel regulatory network, the Rrp2-RpoN-RpoS pathway, which governs differential expression of numerous genes of B. burgdorferi, is essential for this complex life cycle. In this study, we provide evidence showing that the activation of the Rrp2-RpoN-RpoS pathway is modulated, not by the predicted histidine kinase for Rrp2, but rather by acetyl phosphate (acetyl∼P), the intermediate of the Ack-Pta (acetate kinase-phosphate acetyltransferase) metabolic pathway. Based on our findings, we propose that during the enzootic cycle of B. burgdorferi, changes in environmental cues and nutrient conditions lead to an increase in the intracellular acetyl∼P pool in B. burgdorferi, which in turn modulates the activation of the Rrp2-RpoN-RpoS pathway.

15 March 2012 in Journal of Bacteriology
Verified
Journal Article
Closed access
GRGianmarco Raddi
Gianmarco Raddi
DMDustin R. Morado
Dustin R. Morado
JYJie Yan
Jie Yan
DHDavid A. Haake
David A. Haake
FYFrank Yang
Frank Yang
JLJun Liu
Jun Liu
Leptospira interrogansis the primary causative agent of the most widespread zoonotic disease, leptospirosis. An in-depth structural characterization ofL. interrogansis needed to understand its biology and pathogenesis. In this study, cryo-electron tomography (cryo-ET) was used to compare pathogenic and saprophytic species and examine the unique morphological features of this group of bacteria. Specifically, our study revealed a structural difference between the cell envelopes ofL. interrogansandLeptospira biflexainvolving variations in the lipopolysaccharide (LPS) layer. Through cryo-ET and subvolume averaging, we determined the first three-dimensional (3-D) structure of the flagellar motor of leptospira, with novel features in the flagellar C ring, export apparatus, and stator. Together with direct visualization of chemoreceptor arrays, DNA packing, periplasmic filaments, spherical cytoplasmic bodies, and a unique “cap” at the cell end, this report provides structural insights into these fascinatingLeptospiraspecies.