We measured the radiocesium (¹³⁴Cs and ¹³⁷Cs) contamination of 236 greenlings (Hexagrammos otakii) off the coast of Fukushima Prefecture in Japan, following the accident at the Fukushima Daiichi Nuclear Power Plant in March 2011. The radiocesium concentrations of greenlings caught approximately 40 km south of the power plant were significantly higher than those of greenlings caught approximately 50 km north of the power plant. The radiocesium concentrations of greenlings caught in southern waters were significantly higher in shallow than in deep waters. Meanwhile, two outlier specimens of greenlings with higher ¹³⁷Cs concentrations, 16,000 Bq/kg-wet on 1 August 2012 and 1,150 Bq/kg-wet on 8 May 2013, were caught approximately 20 km from the power plant. Our calculations suggest that the probability of two such outlier specimens being found off the coast of Fukushima is exceedingly low. By contrast, extremely contaminated greenlings were frequently caught in the power plant port (geometric mean of ¹³⁷Cs = 17,364 Bq/kg-wet). Our results suggest that the two outlier greenlings with higher ¹³⁷Cs concentrations migrated from the power plant port. Continued close monitoring of radiocesium concentrations in the area should be done to ensure the safety of food supplies.

We estimated the radiocesium translation from contaminated sediments to benthic organisms off the coast of Fukushima. We conducted field investigations and an experiment with a benthic polychaete (Perinereis aibuhitensis) reared on highly contaminated sediments collected from a station 1 km off the Fukushima Dai-ichi Nuclear Power Plant. Results of the field investigations revealed that radiocesium contamination in benthic organisms depended on their feeding habitat. The radiocesium concentration in carnivore or herbivore feeder polychaetes was higher than that in deposit feeders. Radiocesium concentrations of all benthic organism specimens were lower than that in sediments collected from the same sampling point. Results of the rearing experiment showed that the concentration ratio (CR) of ¹³⁷Cs for P. aibuhitensis and contaminated sediments (wet/wet) was less than 0.10. Moreover, 4 days after separation from the contaminated sediments, the ¹³⁷Cs concentrations in P. aibuhitensis rapidly decreased. Based on the results of our field investigations and rearing experiment, we conclude that the intake of radiocesium through the benthic food web is limited for benthic organisms, despite the high contamination of the surrounding sediments.

Heteroplasmic nucleotide polymorphisms are rarely observed in wild animal mitochondrial DNA. The occurrence of such site heteroplasmy is expected to be extremely rare at nonsynonymous sites where the number of nucleotide substitutions per site is low due to functional constraints. This report deals with nonsynonymous mitochondrial heteroplasmy from two wild fish species, chum salmon and Japanese flounder. We detected an A/C nonsynonymous heteroplasmic site corresponding to putative amino acids, Ile or Met, in NADH dehydrogenase subunit-5 (ND5) region of chum salmon. The heteroplasmic site was at the 3rd position of 58th codon. As for Japanese flounder we detected a C/T nonsynonymous heteroplasmic site corresponding to putative amino acids, Leu or Pro, in ND4 region. The heteroplasmic site was at the 2nd position of 450th codon. We also verified heteroplasmy at these sites by sequencing cloned fragments.

This study deals with mitochondrial phylogenetic information of Japanese flounder in the Pacific coast of Tohoku Japan to estimate the genetic population subdivision that was undetectable by conventional population statistics. We determined complete sequences of mitochondrial NADH dehydrogenase subunit-2 (ND2) and subunit-5 (ND5) genes for 151 individuals from northern (Aomori and Iwate prefectures, 40–41°N) and southern (Miyagi and Fukushima prefectures, 37–38°N) waters. Samples from both waters showed high genetic diversity, including 126 haplotypes. These haplotypes were located at mixed and nested positions on an inferred phylogenetic tree, and traditional F-statistics indicated no significant population divergence (φ_ST = −0.00335, p > 0.05), corroborating our previous study. Three variable sites, however, showed significant base composition heterogeneity between samples from the northern and southern waters (Fisher’s exact-test, p < 0.01). Nucleotide substitutions at the three sites converged on an apical clade, which consisted of the five southern individuals, whereas its sister clade consisted only of the three northern individuals. This phylogenetic information corroborates previous ecological studies indicating the presence of separate stocks in the northern and southern waters.

Metagenomic studies, accelerated by the evolution of sequencing technologies and the rapid development of genomic analysis methods, can reveal genetic diversity and biodiversity in various samples including those of uncultured or unknown species. This approach, however, cannot be used to identify active functional genes under actual environmental conditions. Metatranscriptomics, which is similar in approach to metagenomics except that it utilizes RNA samples, is a powerful tool for the transcriptomic study of environmental samples. Unlike metagenomic studies, metatranscriptomic studies have not been popular to date due to problems with reliability, repeatability, redundancy and cost performance. Here, we propose a normalized metatranscriptomic method that is suitable for the collection of genes from samples as a platform for comparative transcriptomics.

Radiocesium (Cs) contamination histories of the Japanese flounder, Paralichthys olivaceus, after the 2011 Fukushima Nuclear Power Plant (FNPP) accident were examined by analysis of the spatiotemporal changes in observed Cs concentrations, by comparison of the dynamics of the Cs concentrations in several year-classes of fish, and by simulation studies. Two contamination histories were revealed: (1) severe contamination by water that was directly released from the FNPP with extremely high Cs concentrations for a few months after the accident, which had a highly variable spatial distribution; and (2) long-duration contamination at relatively low concentrations resulting from consumption of contaminated food. These two histories were supported by three observations. First, high Cs concentrations with high variability were observed in the first year after the accident. Second, the highest values of the minimum Cs concentrations were observed in the autumn of 2011. Third, Cs concentrations were lower with smaller variation for fish from the 2011 year-class and younger, which were not exposed to the highly contaminated directly released water, than for fish from the 2010 year-class and older. Simulation studies also indicated that the Cs concentrations in some individuals that were exposed to the directly released water might not be in an equilibrium state even at 3 years after the accident. On the basis of these contamination histories, it can be expected that the Cs concentrations in most Japanese flounder will continue to decrease.