Yangmee Kim

Yangmee Kim

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2011 in Journal of Biological Chemistry
Verified
Journal Article
Open access
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JKJin-Kyoung Kim
Jin-Kyoung Kim
ELEunjung Lee
Eunjung Lee
SSSoyoung Shin
Soyoung Shin
KJKi-Woong Jeong
Ki-Woong Jeong
JLJee-Young Lee
Jee-Young Lee
YKYangmee Kim
Yangmee Kim
Papiliocin is a novel 37-residue cecropin-like peptide isolated recently from the swallowtail butterfly, Papilio xuthus. With the aim of identifying a potent antimicrobial peptide, we tested papiliocin in a variety of biological and biophysical assays, demonstrating that the peptide possesses very low cytotoxicity against mammalian cells and high bacterial cell selectivity, particularly against Gram-negative bacteria as well as high anti-inflammatory activity. Using LPS-stimulated macrophage RAW264.7 cells, we found that papiliocin exerted its anti-inflammatory activities by inhibiting nitric oxide (NO) production and secretion of tumor necrosis factor (TNF)-α and macrophage inflammatory protein (MIP)-2, producing effects comparable with those of the antimicrobial peptide LL-37. We also showed that the innate defense response mechanisms engaged by papiliocin involve Toll-like receptor pathways that culminate in the nuclear translocation of NF-κB. Fluorescent dye leakage experiments showed that papiliocin targets the bacterial cell membrane. To understand structure-activity relationships, we determined the three-dimensional structure of papiliocin in 300 mm dodecylphosphocholine micelles by NMR spectroscopy, showing that papiliocin has an α-helical structure from Lys3 to Lys21 and from Ala25 to Val36, linked by a hinge region. Interactions between the papiliocin and LPS studied using tryptophan blue-shift data, and saturation transfer difference-NMR experiments revealed that Trp2 and Phe5 at the N-terminal helix play an important role in attracting papiliocin to the cell membrane of Gram-negative bacteria. In conclusion, we have demonstrated that papiliocin is a potent peptide antibiotic with both anti-inflammatory and antibacterial activities, and we have laid the groundwork for future studies of its mechanism of action.

23 February 2009 in Journal of Natural Products
Verified
Journal Article
Closed access
KJKi-Woong Jeong
Ki-Woong Jeong
JLJee-Young Lee
Jee-Young Lee
DKDong-Il Kang
Dong-Il Kang
JLJu-Un Lee
Ju-Un Lee
SSSong Yub Shin
Song Yub Shin
YKYangmee Kim
Yangmee Kim

4 December 2014 in PLOS ONE
Verified
Journal Article
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ELEunjung Lee
Eunjung Lee
ASAreum Shin
Areum Shin
KJKi-Woong Jeong
Ki-Woong Jeong
BJBongwhan Jin
Bongwhan Jin
HJHum Nath Jnawali
Hum Nath Jnawali
YKYangmee Kim
Yangmee Kim
Piscidin-1 (Pis-1) is a linear antibacterial peptide derived from mast cells of aquacultured hybrid striped bass that comprises 22 amino acids with a phenylalanine-rich amino-terminus. Pis-1 exhibits potent antibacterial activity against pathogens but is not selective for distinguishing between bacterial and mammalian cells. To determine the key residues for its antibacterial activity and those for its cytotoxicity, we investigated the role of each Phe residue near the N-terminus as well as the Val10 residue located near the boundary of the hydrophobic and hydrophilic sectors of the helical wheel diagram. Fluorescence dye leakage and tryptophan fluorescence experiments were used to study peptide-lipid interactions, showing comparable depths of insertion of substituted peptides in different membranes. Phe2 was found to be the most deeply inserted phenylalanine in both bacterial- and mammalian-mimic membranes. Each Phe was substituted with Ala or Lys to investigate its functional role. Phe2 plays key roles in the cytotoxicity as well as the antibacterial activities of Pis-1, and Phe6 is essential for the antibacterial activities of Pis-1. We also designed and synthesized a piscidin analog, Pis-V10K, in which Lys was substituted for Val10, resulting in an elevated amphipathic α-helical structure. Pis-V10K showed similar antibacterial activity (average minimum inhibitory concentration (MIC) = 1.6 µM) to Pis-1 (average MIC = 1.5 µM). However, it exhibited much lower cytotoxicity than Pis-1. Lys10-substituted analogs, Pis-F1K/V10K, Pis-F2K/V10K, and Pis-F6K/V10K in which Lys was substituted for Phe retained antibacterial activity toward standard and drug-resistant bacterial strains with novel bacterial cell selectivity. They exert anti-inflammatory activities via inhibition of nitric oxide production, TNF-α secretion, and MIP-1 and MIP-2 production. They may disrupt the binding of LPS to toll-like receptors, eventually suppressing MAPKs-mediated signaling pathways. These peptides may be good candidates for the development of peptide antibiotics with potent antibacterial activity but without cytotoxicity.

7 January 2014 in Journal of Natural Products
Verified
Journal Article
Closed access
HJHum Nath Jnawali
Hum Nath Jnawali
ELEunjung Lee
Eunjung Lee
KJKi-Woong Jeong
Ki-Woong Jeong
ASAreum Shin
Areum Shin
YHYong-Seok Heo
Yong-Seok Heo
YKYangmee Kim
Yangmee Kim

15 October 2014 in Archives of Insect Biochemistry and Physiology
Verified
Journal Article
Closed access
PDF file
ELEunjung Lee
Eunjung Lee
ASAreum Shin
Areum Shin
YKYangmee Kim
Yangmee Kim

31 May 2013 in BMB Reports
Verified
Journal Article
Open access
ELEunjung Lee
Eunjung Lee
KJKi-Woong Jeong
Ki-Woong Jeong
JLJuho Lee
Juho Lee
ASAreum Shin
Areum Shin
JKJin-Kyoung Kim
Jin-Kyoung Kim
YKYangmee Kim
Yangmee Kim
Cecropin A and papiliocin are novel 37-residue cecropin-like antimicrobial peptides isolated from insect. We have confirmed that papiliocin possess high bacterial cell selectivity and has an α-helical structure from Lys3 to Lys21 and from Ala25 to Val35, linked by a hinge region. In this study, we demonstrated that both peptides showed high antimicrobial activities against multi-drug resistant Gram negative bacteria as well as fungi. Interactions between these cecropin-like peptides and phospholipid membrane were studied using CD, dye leakage experiments, and NMR experiments, showing that both peptides have strong permeabilizing activities against bacterial cell membranes and fungal membranes as well as Trp2 and Phe5 at the N-terminal helix play an important role in attracting cecropin-like peptides to the negatively charged bacterial cell membrane. Cecropin-like peptides can be potent peptide antibiotics against multi-drug resistant Gram negative bacteria and fungi. [BMB Reports 2013; 46(5): 282-287]