Marco Simões

Prof. Dr. Marco Simões

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 March 2024 in Gels
Verified
Journal Article
Open access
PDF file
MRMariana Marques Ribeiro
Mariana Marques Ribeiro
MSMarco Simões
Marco Simões
Carla VitorinoCarla Vitorino
Carla Vitorino
Filipa Mascarenhas-MeloFilipa Mascarenhas-Melo
Filipa Mascarenhas-Melo
Hydrogels are polymeric materials that possess a set of characteristics meeting various requirements of an ideal wound dressing, making them promising for wound care. These features include, among others, the ability to absorb and retain large amounts of water and the capacity to closely mimic native structures, such as the extracellular matrix, facilitating various cellular processes like proliferation and differentiation. The polymers used in hydrogel formulations exhibit a broad spectrum of properties, allowing them to be classified into two main categories: natural polymers like collagen and chitosan, and synthetic polymers such as polyurethane and polyethylene glycol. This review offers a comprehensive overview and critical analysis of the key polymers that can constitute hydrogels, beginning with a brief contextualization of the polymers. It delves into their function, origin, and chemical structure, highlighting key sources of extraction and obtaining. Additionally, this review encompasses the main intrinsic properties of these polymers and their roles in the wound healing process, accompanied, whenever available, by explanations of the underlying mechanisms of action. It also addresses limitations and describes some studies on the effectiveness of isolated polymers in promoting skin regeneration and wound healing. Subsequently, we briefly discuss some application strategies of hydrogels derived from their intrinsic potential to promote the wound healing process. This can be achieved due to their role in the stimulation of angiogenesis, for example, or through the incorporation of substances like growth factors or drugs, such as antimicrobials, imparting new properties to the hydrogels. In addition to substance incorporation, the potential of hydrogels is also related to their ability to serve as a three-dimensional matrix for cell culture, whether it involves loading cells into the hydrogel or recruiting cells to the wound site, where they proliferate on the scaffold to form new tissue. The latter strategy presupposes the incorporation of biosensors into the hydrogel for real-time monitoring of wound conditions, such as temperature and pH. Future prospects are then ultimately addressed. As far as we are aware, this manuscript represents the first comprehensive approach that brings together and critically analyzes fundamental aspects of both natural and synthetic polymers constituting hydrogels in the context of cutaneous wound healing. It will serve as a foundational point for future studies, aiming to contribute to the development of an effective and environmentally friendly dressing for wounds.

13 July 2018 in Frontiers in Neuroscience
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Journal Article
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CACarlos Amaral
Carlos Amaral
SMSusana Mouga
Susana Mouga
MSMarco Simões
Marco Simões
HPHelena C. Pereira
Helena C. Pereira
IBInês Bernardino
Inês Bernardino
Miguel Castelo-BrancoMiguel Castelo-Branco
Miguel Castelo-Branco
Deficits in the interpretation of others' intentions from gaze-direction or other social attention cues are well-recognized in ASD. Here we investigated whether an EEG brain computer interface (BCI) can be used to train social cognition skills in ASD patients. We performed a single-arm feasibility clinical trial and enrolled 15 participants (mean age 22y 2m) with high-functioning ASD (mean full-scale IQ 103). Participants were submitted to a BCI training paradigm using a virtual reality interface over seven sessions spread over 4 months. The first four sessions occurred weekly, and the remainder monthly. In each session, the subject was asked to identify objects of interest based on the gaze direction of an avatar. Attentional responses were extracted from the EEG P300 component. A final follow-up assessment was performed 6-months after the last session. To analyze responses to joint attention cues participants were assessed pre and post intervention and in the follow-up, using an ecologic “Joint-attention task.” We used eye-tracking to identify the number of social attention items that a patient could accurately identify from an avatar's action cues (e.g., looking, pointing at). As secondary outcome measures we used the Autism Treatment Evaluation Checklist (ATEC) and the Vineland Adaptive Behavior Scale (VABS). Neuropsychological measures related to mood and depression were also assessed. In sum, we observed a decrease in total ATEC and rated autism symptoms (Sociability; Sensory/Cognitive Awareness; Health/Physical/Behavior); an evident improvement in Adapted Behavior Composite and in the DLS subarea from VABS; a decrease in Depression (from POMS) and in mood disturbance/depression (BDI). BCI online performance and tolerance were stable along the intervention. Average P300 amplitude and alpha power were also preserved across sessions. We have demonstrated the feasibility of BCI in this kind of intervention in ASD. Participants engage successfully and consistently in the task. Although the primary outcome (rate of automatic responses to joint attention cues) did not show changes, most secondary neuropsychological outcome measures showed improvement, yielding promise for a future efficacy trial. (clinical-trial ID: NCT02445625—clinicaltrials.gov).

20 March 2018 in JMIR Serious Games
Verified
Journal Article
Open access
MSMarco Simões
Marco Simões
MBMiguel Bernardes
Miguel Bernardes
FBFernando Barros
Fernando Barros
Miguel Castelo-BrancoMiguel Castelo-Branco
Miguel Castelo-Branco
A multidisciplinary journal on gaming and gamification for health education/promotion, teaching and social change.

1 October 2017 in Journal of Neuroscience Methods
Verified
Journal Article
Closed access
CACarlos P. Amaral
Carlos P. Amaral
MSMarco Simões
Marco Simões
SMSusana Mouga
Susana Mouga
JAJoão Andrade
João Andrade
Miguel Castelo-BrancoMiguel Castelo-Branco
Miguel Castelo-Branco

18 September 2020 in Frontiers in Neuroscience
Verified
Journal Article
Open access
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MSMarco Simões
Marco Simões
DBDavide Borra
Davide Borra
ESEduardo Santamaría-Vázquez
Eduardo Santamaría-Vázquez
MBMayra Bittencourt-Villalpando
Mayra Bittencourt-Villalpando
DKDominik Krzemiński
Dominik Krzemiński
Miguel Castelo-BrancoMiguel Castelo-Branco
Miguel Castelo-Branco
There is a lack of multi-session P300 datasets for Brain-Computer Interfaces (BCI). Publicly available datasets are usually limited by small number of participants with few BCI sessions. In this sense, the lack of large, comprehensive datasets with various individuals and multiple sessions has limited advances in the development of more effective data processing and analysis methods for BCI systems. This is particularly evident to explore the feasibility of deep learning methods that require large datasets. Here we present the BCIAUT-P300 dataset, containing 15 autism spectrum disorder individuals undergoing 7 sessions of P300-based BCI joint-attention training, for a total of 105 sessions. The dataset was used for the 2019 IFMBE Scientific Challenge organized during MEDICON 2019 where, in two phases, teams from all over the world tried to achieve the best possible object-detection accuracy based on the P300 signals. This paper presents the characteristics of the dataset and the approaches followed by the 9 finalist teams during the competition. The winner obtained an average accuracy of 92.3% with a convolutional neural network based on EEGNet. The dataset is now publicly released and stands as a benchmark for future P300-based BCI algorithms based on multiple session data.

14 July 2022 in Journal of Neural Engineering
Verified
Journal Article
Closed access
DBDavide Borra
Davide Borra
EMElisa Magosso
Elisa Magosso
Miguel Castelo-BrancoMiguel Castelo-Branco
Miguel Castelo-Branco
MSMarco Simões
Marco Simões
Objective. P300 can be analyzed in autism spectrum disorder (ASD) to derive biomarkers and can be decoded in brain–computer interfaces to reinforce ASD impaired skills. Convolutional neural networks (CNNs) have been proposed for P300 decoding, outperforming traditional algorithms but they (a) do not investigate optimal designs in different training conditions; (b) lack in interpretability. To overcome these limitations, an interpretable CNN (ICNN), that we recently proposed for motor decoding, has been modified and adopted here, with its optimal design searched via Bayesian optimization. Approach. The ICNN provides a straightforward interpretation of spectral and spatial features learned to decode P300. The Bayesian-optimized (BO) ICNN design was investigated separately for different training strategies (within-subject, within-session, and cross-subject) and BO models were used for the subsequent analyses. Specifically, transfer learning (TL) potentialities were investigated by assessing how pretrained cross-subject BO models performed on a new subject vs. random-initialized models. Furthermore, within-subject BO-derived models were combined with an explanation technique (ICNN + ET) to analyze P300 spectral and spatial features. Main results. The ICNN resulted comparable or even outperformed existing CNNs, at the same time being lighter. BO ICNN designs differed depending on the training strategy, needing more capacity as the training set variability increased. Furthermore, TL provided higher performance than networks trained from scratch. The ICNN + ET analysis suggested the frequency range [2, 5.8] Hz as the most relevant, and spatial features showed a right-hemispheric parietal asymmetry. The ICNN + ET-derived features, but not ERP-derived features, resulted significantly and highly correlated to autism diagnostic observation schedule clinical scores. Significance. This study substantiates the idea that a CNN can be designed both accurate and interpretable for P300 decoding, with an optimized design depending on the training condition. The novel ICNN-based analysis tool was able to better capture ASD neural signatures than traditional event-related potential analysis, possibly paving the way for identifying novel biomarkers.