Chandrasekhar Venkataraman

Dr. Chandrasekhar Venkataraman

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 June 2012 in Journal of The Royal Society Interface
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CECharles M. Elliott
Charles M. Elliott
BSBjörn Stinner
Björn Stinner
CVChandrasekhar Venkataraman
Chandrasekhar Venkataraman
We present a mathematical and a computational framework for the modelling of cell motility. The cell membrane is represented by an evolving surface, with the movement of the cell determined by the interaction of various forces that act normal to the surface. We consider external forces such as those that may arise owing to inhomogeneities in the medium and a pressure that constrains the enclosed volume, as well as internal forces that arise from the reaction of the cells' surface to stretching and bending. We also consider a protrusive force associated with a reaction–diffusion system (RDS) posed on the cell membrane, with cell polarization modelled by this surface RDS. The computational method is based on an evolving surface finite-element method. The general method can account for the large deformations that arise in cell motility and allows the simulation of cell migration in three dimensions. We illustrate applications of the proposed modelling framework and numerical method by reporting on numerical simulations of a model for eukaryotic chemotaxis and a model for the persistent movement of keratocytes in two and three space dimensions. Movies of the simulated cells can be obtained from http://homepages.warwick.ac.uk/∼maskae/CV_Warwick/Chemotaxis.html.

28 March 2013 in IMA Journal of Numerical Analysis
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CLChristian Lubich
Christian Lubich
DMDhia Mansour
Dhia Mansour
CVChandrasekhar Venkataraman
Chandrasekhar Venkataraman
A linear parabolic differential equation on a moving surface is discretized in space by evolving-surface finite elements and in time by backward difference formulas (BDFs). Using results from Dahlquist's G-stability theory and Nevanlinna & Odeh's multiplier technique together with properties of the spatial semidiscretization, stability of the full discretization is proved for BDF methods up to order 5 and optimal-order convergence is shown. Numerical experiments illustrate the behaviour of the fully discrete method.

8 March 2015 in Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
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Anotida MadzvamuseAnotida Madzvamuse
Anotida Madzvamuse
ACAndy H. W. Chung
Andy H. W. Chung
CVChandrasekhar Venkataraman
Chandrasekhar Venkataraman
In this article, we formulate new models for coupled systems of bulk-surface reaction–diffusion equations on stationary volumes. The bulk reaction–diffusion equations are coupled to the surface reaction–diffusion equations through linear Robin-type boundary conditions. We then state and prove the necessary conditions for diffusion-driven instability for the coupled system. Owing to the nature of the coupling between bulk and surface dynamics, we are able to decouple the stability analysis of the bulk and surface dynamics. Under a suitable choice of model parameter values, the bulk reaction–diffusion system can induce patterning on the surface independent of whether the surface reaction–diffusion system produces or not, patterning. On the other hand, the surface reaction–diffusion system cannot generate patterns everywhere in the bulk in the absence of patterning from the bulk reaction–diffusion system. For this case, patterns can be induced only in regions close to the surface membrane. Various numerical experiments are presented to support our theoretical findings. Our most revealing numerical result is that, Robin-type boundary conditions seem to introduce a boundary layer coupling the bulk and surface dynamics.

1 July 2019 in Philosophical Transactions of the Royal Society B: Biological Sciences
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MKMarina Krause
Marina Krause
FYFeng Wei Yang
Feng Wei Yang
MLMariska Te Lindert
Mariska Te Lindert
PIPhilipp Isermann
Philipp Isermann
JSJan Schepens
Jan Schepens
Katarina WolfKatarina Wolf
Katarina Wolf
Directional cell migration in dense three-dimensional (3D) environments critically depends upon shape adaptation and is impeded depending on the size and rigidity of the nucleus. Accordingly, the nucleus is primarily understood as a physical obstacle; however, its pro-migratory functions by stepwise deformation and reshaping remain unclear. Using atomic force spectroscopy, time-lapse fluorescence microscopy and shape change analysis tools, we determined the nuclear size, deformability, morphology and shape change of HT1080 fibrosarcoma cells expressing the Fucci cell cycle indicator or being pre-treated with chromatin-decondensating agent TSA. We show oscillating peak accelerations during migration through 3D collagen matrices and microdevices that occur during shape reversion of deformed nuclei (recoil), and increase with confinement. During G1 cell-cycle phase, nucleus stiffness was increased and yielded further increased speed fluctuations together with sustained cell migration rates in confinement when compared to interphase populations or to periods of intrinsic nuclear softening in the S/G2 cell-cycle phase. Likewise, nuclear softening by pharmacological chromatin decondensation or after lamin A/C depletion reduced peak oscillations in confinement. In conclusion, deformation and recoil of the stiff nucleus contributes to saltatory locomotion in dense tissues. This article is part of a discussion meeting issue ‘Forces in cancer: interdisciplinary approaches in tumour mechanobiology’.

1 January 2013 in SIAM Journal on Numerical Analysis
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Omar LakkisOmar Lakkis
Omar Lakkis
Anotida MadzvamuseAnotida Madzvamuse
Anotida Madzvamuse
CVChandrasekhar Venkataraman
Chandrasekhar Venkataraman
We present and analyze an implicit--explicit timestepping procedure with finite element spatial approximation for semilinear reaction--diffusion systems on evolving domains arising from biological models, such as Schnakenberg's (1979). We employ a Lagrangian formulation of the model equations which permits the error analysis for parabolic equations on a fixed domain but introduces technical difficulties, foremost the space-time dependent conductivity and diffusion. We prove optimal-order error estimates in the ${L}_{\infty}(0,T;{L}_{2}(\varOmega))$ and ${L}_{2}(0,T;{H}^{1}(\varOmega))$ norms, and a pointwise stability result. We remark that these apply to Eulerian solutions. Details on the implementation of the Lagrangian and the Eulerian scheme are provided. We also report on a numerical experiment for an application to pattern formation on an evolving domain.

1 August 2018 in Journal of Theoretical Biology
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TLTommaso Lorenzi
Tommaso Lorenzi
CVChandrasekhar Venkataraman
Chandrasekhar Venkataraman
ALAlexander Lorz
Alexander Lorz
MCMark Chaplain
Mark Chaplain
We present here a space- and phenotype-structured model of selection dynamics between cancer cells within a solid tumour. In the framework of this model, we combine formal analyses with numerical simulations to investigate in silico the role played by the spatial distribution of abiotic components of the tumour microenvironment in mediating phenotypic selection of cancer cells. Numerical simulations are performed both on the 3D geometry of an in silico multicellular tumour spheroid and on the 3D geometry of an in vivo human hepatic tumour, which was imaged using computerised tomography. The results obtained show that inhomogeneities in the spatial distribution of oxygen, currently observed in solid tumours, can promote the creation of distinct local niches and lead to the selection of different phenotypic variants within the same tumour. This process fosters the emergence of stable phenotypic heterogeneity and supports the presence of hypoxic cells resistant to cytotoxic therapy prior to treatment. Our theoretical results demonstrate the importance of integrating spatial data with ecological principles when evaluating the therapeutic response of solid tumours to cytotoxic therapy.