Jaume Vilarrasa

Prof. Jaume Vilarrasa


Research Focus & Metrics

Academic Career Length

38Years (1989-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 January 2017 in Molecules
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ACAlejandro Castro-Alvarez
Alejandro Castro-Alvarez
ACAnna Maria Costa
Anna Maria Costa
JVJaume Vilarrasa
Jaume Vilarrasa
The accuracy of five docking programs at reproducing crystallographic structures of complexes of 8 macrolides and 12 related macrocyclic structures, all with their corresponding receptors, was evaluated. Self-docking calculations indicated excellent performance in all cases (mean RMSD values ≤ 1.0) and confirmed the speed of AutoDock Vina. Afterwards, the lowest-energy conformer of each molecule and all the conformers lying 0–10 kcal/mol above it (as given by Macrocycle, from MacroModel 10.0) were subjected to standard docking calculations. While each docking method has its own merits, the observed speed of the programs was as follows: Glide 6.6 > AutoDock Vina 1.1.2 > DOCK 6.5 >> AutoDock 4.2.6 > AutoDock 3.0.5. For most of the complexes, the five methods predicted quite correct poses of ligands at the binding sites, but the lower RMSD values for the poses of highest affinity were in the order: Glide 6.6 ≈ AutoDock Vina ≈ DOCK 6.5 > AutoDock 4.2.6 >> AutoDock 3.0.5. By choosing the poses closest to the crystal structure the order was: AutoDock Vina > Glide 6.6 ≈ DOCK 6.5 ≥ AutoDock 4.2.6 >> AutoDock 3.0.5. Re-scoring (AutoDock 4.2.6//AutoDock Vina, Amber Score and MM-GBSA) improved the agreement between the calculated and experimental data. For all intents and purposes, these three methods are equally reliable.


1 October 2004 in Bioorganic & Medicinal Chemistry Letters
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Journal Article
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OPOriol Pineda
Oriol Pineda
JFJaume Farràs
Jaume Farràs
LMLaura Maccari
Laura Maccari
Fabrizio ManettiFabrizio Manetti
Fabrizio Manetti
MBMaurizio Botta
Maurizio Botta
JVJaume Vilarrasa
Jaume Vilarrasa



1 March 2011 in Angewandte Chemie International Edition
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CICarles Isart
Carles Isart
DBDavid Bastida
David Bastida
JBJordi Burés
Jordi Burés
JVJaume Vilarrasa
Jaume Vilarrasa
Golden solution: A neutral solution of AuBr3, containing [AuBr2(OH)2]− in equilibrium with [AuBr3(OH)]− and [AuBr4]−, promotes the chemoselective hydrolysis of robust oximes into carbonyl compounds without racemization (see scheme). The food additive diacetyl acts as a NH2OH-trapping agent, thus avoiding the formation of gold nanoparticles and allows the reaction to run catalytically.