Marine heatwaves (MHWs) are prolonged discrete events of anomalously warm seawater observed around the world. The occurrence of MHWs in the Japan/East Sea (JES), a middle latitude marginal sea with abundant aquatic resources, has severe impacts on marine ecosystems and human society. We used satellite remote sensing products spanning 1982–2020 to investigate the mean states and variations of JES MHWs. The results show that the JES MHWs occurred twice per year. More than 40% of the MHWs were shorter than the mean duration of 12.6 days and weaker than the mean intensity of 2.4 °C. Frequent MHWs were observed in August, while high mean intensities were observed in winter and spring in the western JES. In recent years, the area’s averaged yearly sum of MHW intensity in the JES has increased dramatically, with a positive trend of 29.62 °C days per decade—over twice the average global trend (12.37 °C days per decade), which is further confirmed by its first empirical orthogonal function mode. The strengthening trend in MHWs may be explained by oceanic dynamics rather than atmospheric forcing, and may result in increased surface latent heat flux from the ocean to the atmosphere.

Volume, heat and freshwater transports from the South China Sea (SCS) to the Java Sea through the Karimata Strait are estimated based on direct measurements of current, temperature, salinity, and satellite observations. Subject to strong seasonal variability, the volume, heat, freshwater transports are −1.98 ± 0.23 Sv (1 Sv = 10⁶ m³/s), −209.68 ± 15.19 TW (1 TW = 10¹² W), −99.87 ± 15.11 mSv (1 mSv = 10^‐3 Sv) in boreal winter, and 0.47 ± 0.20 Sv, 61.06 ± 15.46 TW, 31.67 ± 8.76 mSv in boreal summer, respectively (negative transport defined from SCS to Java Sea). The annual mean volume, heat and freshwater transports are −0.78 ± 0.12 Sv, −77.31 ± 4.99 TW, and −30.87 ± 6.15 mSv, respectively. The freshwater transport through Karimata Strait is as large as 42% of rainfall input to the entire Indonesian seas in boreal winter, thereby modulating the Indonesian Throughflow (ITF) through the “freshwater plug” effect in the Makassar Strait. The interannual variability of the transports is not significantly correlated to the Indian Ocean Dipole and El Niño‐Southern Oscillation. There is a significant decreasing trend of volume and heat transports from the SCS to Java Sea over the period of 1997–2015, with a reduction of 0.26 Sv and 15 TW, respectively. The freshwater transport decreases 12.29 mSv by 2016 compared with that in 2009, equivalent to 33.2%–49.72% of the annual mean freshwater transport during 2009–2016. This decreasing trend would play contradictory roles in the decadal trend of ITF transport by building a “freshwater plug” in the southern Makassar Strait and a ‘buoyant plume’ in the Indo‐Australian Basin, respectively.