Marek Sikora

Prof. Dr. Marek Sikora

Department of Computer Networks and Systems, Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland
orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 March 2013 in BMC Bioinformatics
Verified
Journal Article
Open access
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AGAdam Gudyś
Adam Gudyś
MSMichał Szcześniak
Michał Szcześniak
Marek SikoraMarek Sikora
Marek Sikora
IMIzabela Makałowska
Izabela Makałowska
Machine learning techniques are known to be a powerful way of distinguishing microRNA hairpins from pseudo hairpins and have been applied in a number of recognised miRNA search tools. However, many current methods based on machine learning suffer from some drawbacks, including not addressing the class imbalance problem properly. It may lead to overlearning the majority class and/or incorrect assessment of classification performance. Moreover, those tools are effective for a narrow range of species, usually the model ones. This study aims at improving performance of miRNA classification procedure, extending its usability and reducing computational time. We present HuntMi, a stand-alone machine learning miRNA classification tool. We developed a novel method of dealing with the class imbalance problem called ROC-select, which is based on thresholding score function produced by traditional classifiers. We also introduced new features to the data representation. Several classification algorithms in combination with ROC-select were tested and random forest was selected for the best balance between sensitivity and specificity. Reliable assessment of classification performance is guaranteed by using large, strongly imbalanced, and taxon-specific datasets in 10-fold cross-validation procedure. As a result, HuntMi achieves a considerably better performance than any other miRNA classification tool and can be applied in miRNA search experiments in a wide range of species. Our results indicate that HuntMi represents an effective and flexible tool for identification of new microRNAs in animals, plants and viruses. ROC-select strategy proves to be superior to other methods of dealing with class imbalance problem and can possibly be used in other machine learning classification tasks. The HuntMi software as well as datasets used in the research are freely available at http://lemur.amu.edu.pl/share/HuntMi/ .

1 July 2018 in Information Sciences
Verified
Journal Article
Closed access
DŚDominik Ślęzak
Dominik Ślęzak
MGMarek Grzegorowski
Marek Grzegorowski
AJAndrzej Janusz
Andrzej Janusz
MKMichał Kozielski
Michał Kozielski
SNSinh Hoa Nguyen
Sinh Hoa Nguyen
ŁWŁukasz Wróbel
Łukasz Wróbel

13 June 2022 in Energies
Verified
Journal Article
Open access
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JHJoanna Henzel
Joanna Henzel
ŁWŁukasz Wróbel
Łukasz Wróbel
MFMarcin Fice
Marcin Fice
Marek SikoraMarek Sikora
Marek Sikora
The aim of the paper is to propose a new approach to forecast the energy consumption for the next day using the unique data obtained from a digital twin model of a building. In the research, we tested which of the chosen forecasting methods and which set of input data gave the best results. We tested naive methods, linear regression, LSTM and the Prophet method. We found that the Prophet model using information about the total energy consumption and real data about the energy consumption of the top 10 energy-consuming devices gave the best forecast of energy consumption for the following day. In this paper, we also presented a methodology of using decision trees and a unique set of conditional attributes to understand the errors made by the forecast model. This methodology was also proposed to reduce the number of monitored devices. The research that is described in this article was carried out in the context of a project that deals with the development of a digital twin model of a building.

1 June 2019 in Knowledge-Based Systems
Verified
Journal Article
Closed access
Marek SikoraMarek Sikora
Marek Sikora
ŁWŁukasz Wróbel
Łukasz Wróbel
AGAdam Gudyś
Adam Gudyś

10 October 2022 in SoftwareX
Verified
Journal Article
Open access
DMDawid Macha
Dawid Macha
MKMichał Kozielski
Michał Kozielski
ŁWŁukasz Wróbel
Łukasz Wróbel
Marek SikoraMarek Sikora
Marek Sikora

24 December 2016 in Fundamenta Informaticae
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Journal Article
Closed access
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ŁWŁukasz Wróbel
Łukasz Wróbel
Marek SikoraMarek Sikora
Marek Sikora
MMMarcin Michalak
Marcin Michalak
The paper presents the results of research related to the efficiency of the so-called rule quality measures which are used to evaluate the quality of rules at each stage of the rule induction. The stages of rule growing and pruning were considered along with the issue of conflict resolution which may occur during the classification. The work is the continuation of research on the efficiency of quality measures employed in sequential covering rule induction algorithm. In this paper we analyse only these quality measures (8 measures) which had been recognized as effective based on previous conducted research. The study was conducted on approximately 70 benchmark datasets related to classification, regression and survival analysis problems. In the comparisons we analyzed prognostic abilities of the induced rules as well as the complexity of the resulting rule-based data models.