Over the last 5 years, Southern blight caused by Sclerotium rolfsii Sacc. has superseded root rots caused by pathogens such as Fusarium and Pythium spp. as a major constraint of common bean (Phaseolus vulgaris L.) production in Uganda. Although S. rolfsii is prevalent in all bean-growing regions of Uganda, there is a lack of information about its diversity and pathogenicity to guide the development of effective management strategies. In total, 348 S. rolfsii isolates were obtained from bean fields in seven agroecological zones of Uganda, with the following objectives: to characterize their morphology, based on mycelial growth rate, mycelium texture, and number of sclerotia; and to determine the pathogenicity of 75 selected isolates on five common bean varieties in artificially inoculated soils in a screenhouse. We found that mycelial growth rate and the number of sclerotia produced on artificial media varied among agroecological zones but not within a zone. The five bean varieties tested were found to be susceptible to S. rolfsii, including varieties MLB49-89A and RWR719 that are resistant to Fusarium and Pythium root rots, respectively. Preemergence damping-off ranged between 0 and 100%, and disease severity index ranged between 4.4 and 100%. The widespread and high levels of S. rolfsii virulence on varieties of common bean indicate that management intervention is urgently required to help reduce losses incurred by Ugandan smallholder farmers. [ ] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .

The fall armyworm (Spodoptera frugiperda J.E Smith) (Lepidoptera: Noctuidae) invaded Africa in 2016, and has since spread to all countries in sub-Saharan Africa, causing devastating effects on mainly maize and sorghum. The rapid spread of this pest is aided by its high reproductive rate, high migration ability, wide host range and adaptability to different environments, among others. Since its introduction, many governments purchased and distributed pesticides for emergency control, with minimal regard to their efficacy. In this chapter, we review efforts towards managing this pest, highlight key challenges, and provide our thoughts on considerations for sustainable management of the pest.

Spodoptera frugiperda (Lepidoptera: Noctuidae), commonly known as fall armyworm, was first detected in Uganda in 2016 and has spread to all the maize-growing districts. Different methods have been deployed to control this pest. However, there is a limited understanding of the role of the environment and farmers’ practices on the abundance of and damage by S. frugiperda in Uganda. This study, therefore, assessed the abundance of S. frugiperda and leaf damage levels in three different districts and explored the association between agronomic practices, crop phenology, and weather parameters on S. frugiperda damage and abundance in smallholder farmers’ maize fields using a longitudinal monitoring survey in 69 farmers’ fields of Kole, Kiryandongo, and Nakaseke for three seasons. The numbers of egg masses and adults were generally low. The highest numbers of adults were trapped in Kiryandongo, followed by Nakaseke, and the lowest numbers were trapped in Kole. Leaf damage and incidence of damaged plants differed significantly between districts and seasons. Leaf damage and abundance of larvae varied significantly in the districts and at different growth stages. Conservation tillage, reduced weeding frequency, increased rainfall and high maximum temperatures were associated with reduced S. frugiperda damage. No significant relationship was observed between pesticide or cropping systems with S. frugiperda leaf damage. However, the influence of fertilizer use on leaf damage was contradictory across seasons and districts. Timely and vigilant scouting, proper timing of control measures, and minimum tillage practices should be included in an IPM strategy for S. frugiperda.

Bean leaf beetles (Ootheca spp.) (Insecta: Coleoptera: Chrysomelidae) are one of Africa’s most destructive pests of common bean and other leguminous crops. The beetles are widely distributed in Africa where they are estimated to cause annual crop yield losses of 116,400 tons of crop yields in sub-Saharan Africa. Despite their importance, little is known about the distribution, relative abundance and damage caused by bean leaf beetles in Uganda. As a result, the development of effective management methods has been hampered. We conducted surveys in six key Ugandan agro-ecological zones to determine the species distribution and relative abundance of bean leaf beetles. Findings indicate that leaf beetles belonging to 12 genera are present, including members of the genera Afrophthalma Medvedev, 1980, Buphonella Jacoby, 1903, Chrysochrus Chevrolat in Dejean, 1836, Diacantha Dejean, 1845, Exosoma Jacoby, 1903, Lamprocopa Hincks, 1949, Lema Fabricius, 1798, Nisotra Baly, 1864, Neobarombiella Bolz and Wagner, 2012, Ootheca Dejean, 1935, Parasbecesta Laboissière, 1940, and Plagiodera Dejean, 1835. We identified only three species belonging to the genus Ootheca: O. mutabilis, O. proteus, and O. orientalis. Seventy percent of all the beetles collected were O. mutabilis and these were present in all agro-ecological zones studied. The Northern Moist Farmlands (21.9%), West Nile Farmlands (12.9%), Central Wooded Savanna (4.4%) and Southern and Eastern Lake Kyoga Basin (1.4%) were the only agro-ecological zones where O. proteus was found. Only one specimen of O. orientalis was found at a single site in the Central Wooded Savanna. The Northern Moist Farmlands had a significantly (p < 0.05) higher bean leaf beetle density than the West Nile Farmlands and Southwestern Highlands. Similarly, the Northern Moist Farmlands had the highest beetle foliar damage per plant (1.15 ± 0.05), while the Southwestern Highlands had the lowest (0.03 ± 0.02). We provide the first information on Ootheca species distribution, abundance and damage in Uganda. Our findings provide a foundation for assessing the importance of Ootheca spp. as common bean pests in Uganda.

Bean leaf beetles (Ootheca spp.) (Coleoptera: Chrysomelidae) are one of Africa’s most important pests of the common bean (Phaseolus vulgaris L.). Roots, leaves, floral parts, and young pods are all attacked, leading to a considerable loss in grain yield. In Uganda, there are no comprehensive prescribed management strategies for bean leaf beetles, but farmers typically try to control the pest by delaying bean crop sowing, and to a lesser extent, using insecticides. Although farmers have consistently implemented the two approaches, there is no information on the effects of the approaches in Uganda. To assess the impact of planting timing and insecticide spray regimes on bean leaf beetle populations, concomitant foliar damage, and grain yield, we set up trials in three agro-ecological zones with known presence of the beetles during the second rainy season of 2016 (2016) and the first rainy season of 2017 (2017). The first planting, coinciding with early planting, was conducted within one week after the onset of rains. The second planting, coinciding with mid planting, followed two weeks later, while the third planting, considered late planting in this study, was conducted one month after the second planting. A foliar application of cypermethrin commencing at 7 days after emergence (DAE), 14 DAE, 21 DAE, 28 DAE, and 35 DAE; a soil drench of imidacloprid at planting combined with a foliar spray starting at 7 DAE; and an untreated control were among the insecticide spray regimes evaluated. Higher bean leaf beetle abundance was recorded from mid-planting, while higher foliar damage was recorded from late planting in two of the three agro-ecological zones. However, higher marketable grain yield was recorded from early planting in all agro-ecological zones, suggesting that delayed planting may not be beneficial. Insecticide application reduced foliar damage and increased marketable grain yield, with a combination of soil drench and foliar spray resulting in much less foliar damage and, as a result, higher grain yield. However, this did not result in economic benefits. Furthermore, marketable grain yield was higher when insecticide spray regimes were combined with early planting in all agro-ecological zones during both seasons. Our findings suggest that the common bean should be planted early and that the control of the bean leaf beetle should target both the adults and the juvenile stages in the soil. Therefore, there is a need for farmers to be able to access less-expensive soil treatments.

Sclerotium rolfsii Sacc. is a soil-borne fungus that causes southern blight on many crops in the tropical and subtropical regions. In 2018, southern blight was reported as the most prevalent bean root rot in Uganda. Earlier studies ascertained the morphological and pathogenic diversity of S. rolfsii, but a limited understanding of its genetic diversity exists. Knowledge of S. rolfsii genetic diversity is a critical resource for pathogen surveillance and developing common bean varieties with durable resistance. A total of 188 S. rolfsii strains from infected common bean plants were collected from seven agro-ecological zones of Uganda in 2013, 2020 and 2021, and characterized morphologically and pathogenically. The genetic diversity of the strains was assessed using single-nucleotide polymorphisms (SNPs) obtained from whole-genome sequencing. The growth rate of the strains ranged between 1.1 and 3.6 cm per day, while the number of sclerotia produced ranged from 0 to 543 per strain. The strains had fluffy, fibrous, and compact colony texture. The strains were pathogenic on common bean and caused disease severity indices ranging from 10.1% to 93.3%. Average polymorphic information content across all chromosomes was 0.27. Population structure analysis identified five genetically distinct clusters. The results of analysis of molecular variance revealed that 54% of the variation was between clusters while 46% of variation was within clusters. Pairwise comparison of Wright’s fixation indices between genetic clusters ranged from 0.31 to 0.78. The findings of this study revealed moderate genetic diversity among S. rolfsii strains, which should be taken into consideration when selecting strains for germplasm screening.