Yuting Guo

Yuting Guo


Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 August 2024 in Journal of the American Medical Informatics Association
Verified
Journal Article
Open access
PDF file
YGYuting Guo
Yuting Guo
AOAnthony Ovadje
Anthony Ovadje
MAMohammed Ali Al-Garadi
Mohammed Ali Al-Garadi
ASAbeed Sarker
Abeed Sarker
Large language models (LLMs) have demonstrated remarkable success in natural language processing (NLP) tasks. This study aimed to evaluate their performances on social media-based health-related text classification tasks. We benchmarked 1 Support Vector Machine (SVM), 3 supervised pretrained language models (PLMs), and 2 LLMs-based classifiers across 6 text classification tasks. We developed 3 approaches for leveraging LLMs: employing LLMs as zero-shot classifiers, using LLMs as data annotators, and utilizing LLMs with few-shot examples for data augmentation. Across all tasks, the mean (SD) F1 score differences for RoBERTa, BERTweet, and SocBERT trained on human-annotated data were 0.24 (±0.10), 0.25 (±0.11), and 0.23 (±0.11), respectively, compared to those trained on the data annotated using GPT3.5, and were 0.16 (±0.07), 0.16 (±0.08), and 0.14 (±0.08) using GPT4, respectively. The GPT3.5 and GPT4 zero-shot classifiers outperformed SVMs in a single task and in 5 out of 6 tasks, respectively. When leveraging LLMs for data augmentation, the RoBERTa models trained on GPT4-augmented data demonstrated superior or comparable performance compared to those trained on human-annotated data alone. The results revealed that using LLM-annotated data only for training supervised classification models was ineffective. However, employing the LLM as a zero-shot classifier exhibited the potential to outperform traditional SVM models and achieved a higher recall than the advanced transformer-based model RoBERTa. Additionally, our results indicated that utilizing GPT3.5 for data augmentation could potentially harm model performance. In contrast, data augmentation with GPT4 demonstrated improved model performances, showcasing the potential of LLMs in reducing the need for extensive training data. By leveraging the data augmentation strategy, we can harness the power of LLMs to develop smaller, more effective domain-specific NLP models. Using LLM-annotated data without human guidance for training lightweight supervised classification models is an ineffective strategy. However, LLM, as a zero-shot classifier, shows promise in excluding false negatives and potentially reducing the human effort required for data annotation.

20 July 2022 in Array
Verified
Journal Article
Open access
MAMohammed Ali Al-Garadi
Mohammed Ali Al-Garadi
SKSangmi Kim
Sangmi Kim
YGYuting Guo
Yuting Guo
EWElise Warren
Elise Warren
YYYuan-Chi Yang
Yuan-Chi Yang
ASAbeed Sarker
Abeed Sarker
Intimate partner violence (IPV) is a preventable public health problem that affects millions of people worldwide. Approximately one in four women are estimated to be or have been victims of severe violence at some point in their lives, irrespective of age, ethnicity, and economic status. Victims often report IPV experiences on social media, and automatic detection of such reports via machine learning may enable improved surveillance and targeted distribution of support and/or interventions for those in need. However, no artificial intelligence systems for automatic detection currently exists, and we attempted to address this research gap. We collected posts from Twitter using a list of IPV-related keywords, manually reviewed subsets of retrieved posts, and prepared annotation guidelines to categorize tweets into IPV-report or non-IPV-report. We annotated 6,348 tweets in total, with the inter-annotator agreement (IAA) of 0.86 (Cohen's kappa) among 1,834 double-annotated tweets. The class distribution in the annotated dataset was highly imbalanced, with only 668 posts (~11%) labeled as IPV-report. We then developed an effective natural language processing model to identify IPV-reporting tweets automatically. The developed model achieved classification F1-scores of 0.76 for the IPV-report class and 0.97 for the non-IPV-report class. We conducted post-classification analyses to determine the causes of system errors and to ensure that the system did not exhibit biases in its decision making, particularly with respect to race and gender. Our automatic model can be an essential component for a proactive social media-based intervention and support framework, while also aiding population-level surveillance and large-scale cohort studies.

6 January 2025 in Journal of Medical Internet Research
Verified
Journal Article
Open access
SDSudeshna Das
Sudeshna Das
YGYao Ge
Yao Ge
YGYuting Guo
Yuting Guo
Swati RajwalSwati Rajwal
Swati Rajwal
JHJaMor Hairston
JaMor Hairston
ASAbeed Sarker
Abeed Sarker
Background: The increasing use of social media to share lived and living experiences of substance use presents a unique opportunity to obtain information on side effects, use patterns, and opinions on novel psychoactive substances. However, due to the large volume of data, obtaining useful insights through natural language processing technologies such as large language models is challenging. Objective: This paper aims to develop a retrieval-augmented generation (RAG) architecture for medical question answering pertaining to clinicians’ queries on emerging issues associated with health-related topics, using user-generated medical information on social media. Methods: We proposed a two-layer RAG framework for query-focused answer generation and evaluated a proof of concept for the framework in the context of query-focused summary generation from social media forums, focusing on emerging drug-related information. Our modular framework generates individual summaries followed by an aggregated summary to answer medical queries from large amounts of user-generated social media data in an efficient manner. We compared the performance of a quantized large language model (Nous-Hermes-2-7B-DPO), deployable in low-resource settings, with GPT-4. For this proof-of-concept study, we used user-generated data from Reddit to answer clinicians’ questions on the use of xylazine and ketamine. Results: Our framework achieves comparable median scores in terms of relevance, length, hallucination, coverage, and coherence when evaluated using GPT-4 and Nous-Hermes-2-7B-DPO, evaluated for 20 queries with 76 samples. There was no statistically significant difference between GPT-4 and Nous-Hermes-2-7B-DPO for coverage (Mann-Whitney U=733.0; n1=37; n2=39; P=.89 two-tailed), coherence (U=670.0; n1=37; n2=39; P=.49 two-tailed), relevance (U=662.0; n1=37; n2=39; P=.15 two-tailed), length (U=672.0; n1=37; n2=39; P=.55 two-tailed), and hallucination (U=859.0; n1=37; n2=39; P=.01 two-tailed). A statistically significant difference was noted for the Coleman-Liau Index (U=307.5; n1=20; n2=16; P<.001 two-tailed). Conclusions: Our RAG framework can effectively answer medical questions about targeted topics and can be deployed in resource-constrained settings.

5 August 2022 in Healthcare
Verified
Journal Article
Open access
PDF file
YGYuting Guo
Yuting Guo
YGYao Ge
Yao Ge
YYYuan-Chi Yang
Yuan-Chi Yang
MAMohammed Ali Al-Garadi
Mohammed Ali Al-Garadi
ASAbeed Sarker
Abeed Sarker
Pretrained contextual language models proposed in the recent past have been reported to achieve state-of-the-art performances in many natural language processing (NLP) tasks, including those involving health-related social media data. We sought to evaluate the effectiveness of different pretrained transformer-based models for social media-based health-related text classification tasks. An additional objective was to explore and propose effective pretraining strategies to improve machine learning performance on such datasets and tasks. We benchmarked six transformer-based models that were pretrained with texts from different domains and sources—BERT, RoBERTa, BERTweet, TwitterBERT, BioClinical_BERT, and BioBERT—on 22 social media-based health-related text classification tasks. For the top-performing models, we explored the possibility of further boosting performance by comparing several pretraining strategies: domain-adaptive pretraining (DAPT), source-adaptive pretraining (SAPT), and a novel approach called topic specific pretraining (TSPT). We also attempted to interpret the impacts of distinct pretraining strategies by visualizing document-level embeddings at different stages of the training process. RoBERTa outperformed BERTweet on most tasks, and better than others. BERT, TwitterBERT, BioClinical_BERT and BioBERT consistently underperformed. For pretraining strategies, SAPT performed better or comparable to the off-the-shelf models, and significantly outperformed DAPT. SAPT + TSPT showed consistently high performance, with statistically significant improvement in three tasks. Our findings demonstrate that RoBERTa and BERTweet are excellent off-the-shelf models for health-related social media text classification, and extended pretraining using SAPT and TSPT can further improve performance.

4 July 2023 in Journal of the American Heart Association
Verified
Journal Article
Open access
YGYuting Guo
Yuting Guo
MAMohammed A. Al‐Garadi
Mohammed A. Al‐Garadi
WBWendy M. Book
Wendy M. Book
LILindsey C. Ivey
Lindsey C. Ivey
FRFred H. Rodriguez
Fred H. Rodriguez
ASAbeed Sarker
Abeed Sarker
Background: The Fontan operation is associated with significant morbidity and premature mortality. Fontan cases cannot always be identified by International Classification of Diseases ( ICD ) codes, making it challenging to create large Fontan patient cohorts. We sought to develop natural language processing–based machine learning models to automatically detect Fontan cases from free texts in electronic health records, and compare their performances with ICD code–based classification. Methods and Results: We included free‐text notes of 10 935 manually validated patients, 778 (7.1%) Fontan and 10 157 (92.9%) non‐Fontan, from 2 health care systems. Using 80% of the patient data, we trained and optimized multiple machine learning models, support vector machines and 2 versions of RoBERTa (a robustly optimized transformer‐based model for language understanding), for automatically identifying Fontan cases based on notes. For RoBERTa, we implemented a novel sliding window strategy to overcome its length limit. We evaluated the machine learning models and ICD code–based classification on 20% of the held‐out patient data using the F 1 score metric. The ICD classification model, support vector machine, and RoBERTa achieved F 1 scores of 0.81 (95% CI, 0.79–0.83), 0.95 (95% CI, 0.92–0.97), and 0.89 (95% CI, 0.88–0.85) for the positive (Fontan) class, respectively. Support vector machines obtained the best performance ( P <0.05), and both natural language processing models outperformed ICD code–based classification ( P <0.05). The sliding window strategy improved performance over the base model ( P <0.05) but did not outperform support vector machines. ICD code–based classification produced more false positives. Conclusions: Natural language processing models can automatically detect Fontan patients based on clinical notes with higher accuracy than ICD codes, and the former demonstrated the possibility of further improvement.

23 September 2023 in Data in Brief
Verified
Journal Article
Open access
YGYuting Guo
Yuting Guo
SDSudeshna Das
Sudeshna Das
SLSahithi Lakamana
Sahithi Lakamana
ASAbeed Sarker
Abeed Sarker
The dataset described is an aspect-level sentiment analysis dataset for therapies, including medication, behavioral and other therapies, created by leveraging user-generated text from Twitter. The dataset was constructed by collecting Twitter posts using keywords associated with the therapies (often referred to as treatments). Subsequently, subsets of the collected posts were manually reviewed, and annotation guidelines were developed to categorize the posts as positive, negative, or neutral.