Baiying Lei

Dr. Baiying Lei


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2022 in Medical Image Analysis
Verified
Journal Article
Closed access
HWHuisi Wu
Huisi Wu
SCShihuai Chen
Shihuai Chen
GCGuilian Chen
Guilian Chen
WWWei Wang
Wei Wang
BLBaiying Lei
Baiying Lei
ZWZhenkun Wen
Zhenkun Wen

1 May 2021 in Medical Image Analysis
Verified
Journal Article
Closed access
HWHuisi Wu
Huisi Wu
WWWei Wang
Wei Wang
JZJiafu Zhong
Jiafu Zhong
BLBaiying Lei
Baiying Lei
ZWZhenkun Wen
Zhenkun Wen
JQJing Qin
Jing Qin

30 April 2019 in IEEE Access
Verified
Journal Article
Open access
CFChiyu Feng
Chiyu Feng
AEAhmed Elazab
Ahmed Elazab
PYPeng Yang
Peng Yang
TWTianfu Wang
Tianfu Wang
FZFeng Zhou
Feng Zhou
BLBaiying Lei
Baiying Lei
Alzheimer’s disease (AD) is an irreversible progressive neurodegenerative disorder. Mild cognitive impairment (MCI) is the prodromal state of AD, which is further classified into a progressive state (i.e., pMCI) and a stable state (i.e., sMCI). With the development of deep learning, convolutional neural networks (CNNs) have made great progress in image recognition using magnetic resonance imaging (MRI) and positron emission tomography (PET) for AD diagnosis. However, due to the limited availability of these imaging data, it is still challenging to effectively use CNNs for AD diagnosis. Toward this end, we design a novel deep learning framework. Specifically, the virtues of 3D-CNN and fully stacked bidirectional long short-term memory (FSBi-LSTM) are exploited in our framework. First, we design a 3D-CNN architecture to derive deep feature representation from both MRI and PET. Then, we apply FSBi-LSTM on the hidden spatial information from deep feature maps to further improve its performance. Finally, we validate our method on the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. Our method achieves average accuracies of 94.82.

7 May 2015 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Closed access
YSYouyi Song
Youyi Song
LZLing Zhang
Ling Zhang
SCSiping Chen
Siping Chen
DNDong Ni
Dong Ni
BLBaiying Lei
Baiying Lei
TWTianfu Wang
Tianfu Wang
In this paper, a multiscale convolutional network (MSCN) and graph-partitioning-based method is proposed for accurate segmentation of cervical cytoplasm and nuclei. Specifically, deep learning via the MSCN is explored to extract scale invariant features, and then, segment regions centered at each pixel. The coarse segmentation is refined by an automated graph partitioning method based on the pretrained feature. The texture, shape, and contextual information of the target objects are learned to localize the appearance of distinctive boundary, which is also explored to generate markers to split the touching nuclei. For further refinement of the segmentation, a coarse-to-fine nucleus segmentation framework is developed. The computational complexity of the segmentation is reduced by using superpixel instead of raw pixels. Extensive experimental results demonstrate that the proposed cervical nucleus cell segmentation delivers promising results and outperforms existing methods.

26 July 2019 in Journal of Medical Internet Research
Verified
Journal Article
Open access
SGSyed Jamal Safdar Gardezi
Syed Jamal Safdar Gardezi
AEAhmed Elazab
Ahmed Elazab
BLBaiying Lei
Baiying Lei
TWTianfu Wang
Tianfu Wang
Background: Machine learning (ML) has become a vital part of medical imaging research. ML methods have evolved over the years from manual seeded inputs to automatic initializations. The advancements in the field of ML have led to more intelligent and self-reliant computer-aided diagnosis (CAD) systems, as the learning ability of ML methods has been constantly improving. More and more automated methods are emerging with deep feature learning and representations. Recent advancements of ML with deeper and extensive representation approaches, commonly known as deep learning (DL) approaches, have made a very significant impact on improving the diagnostics capabilities of the CAD systems. Objective: This review aimed to survey both traditional ML and DL literature with particular application for breast cancer diagnosis. The review also provided a brief insight into some well-known DL networks. Methods: In this paper, we present an overview of ML and DL techniques with particular application for breast cancer. Specifically, we search the PubMed, Google Scholar, MEDLINE, ScienceDirect, Springer, and Web of Science databases and retrieve the studies in DL for the past 5 years that have used multiview mammogram datasets. Results: The analysis of traditional ML reveals the limited usage of the methods, whereas the DL methods have great potential for implementation in clinical analysis and improve the diagnostic capability of existing CAD systems. Conclusions: From the literature, it can be found that heterogeneous breast densities make masses more challenging to detect and classify compared with calcifications. The traditional ML methods present confined approaches limited to either particular density type or datasets. Although the DL methods show promising improvements in breast cancer diagnosis, there are still issues of data scarcity and computational cost, which have been overcome to a significant extent by applying data augmentation and improved computational power of DL algorithms.

7 September 2016 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
YSYouyi Song
Youyi Song
ETEe-Leng Tan
Ee-Leng Tan
Xudong JiangXudong Jiang
Xudong Jiang
JCJie-Zhi Cheng
Jie-Zhi Cheng
DNDong Ni
Dong Ni
TWTianfu Wang
Tianfu Wang
Accurate segmentation of cervical cells in Pap smear images is an important step in automatic pre-cancer identification in the uterine cervix. One of the major segmentation challenges is overlapping of cytoplasm, which has not been well-addressed in previous studies. To tackle the overlapping issue, this paper proposes a learning-based method with robust shape priors to segment individual cell in Pap smear images to support automatic monitoring of changes in cells, which is a vital prerequisite of early detection of cervical cancer. We define this splitting problem as a discrete labeling task for multiple cells with a suitable cost function. The labeling results are then fed into our dynamic multi-template deformation model for further boundary refinement. Multi-scale deep convolutional networks are adopted to learn the diverse cell appearance features. We also incorporated high-level shape information to guide segmentation where cell boundary might be weak or lost due to cell overlapping. An evaluation carried out using two different datasets demonstrates the superiority of our proposed method over the state-of-the-art methods in terms of segmentation accuracy.