Red clover (Trifolium pratense L.) is an important cool-season legume plant, which is the most widely planted forage legume after alfalfa. Although a draft genome sequence was published already, the sequences and completed structure of mRNA transcripts remain unclear, which limit further explore on red clover. In this study, the red clover transcriptome was sequenced using single-molecule long-read sequencing to identify full-length splice isoforms, and 29,730 novel isoforms from known genes and 2194 novel isoforms from novel genes were identified. A total of 5492 alternative splicing events was identified and the majority of alter spliced events in red clover was corrected as intron retention. In addition, of the 15,229 genes detected by SMRT, 8719 including 186,517 transcripts have at least one poly(A) site. Furthermore, we identified 4333 long non-coding RNAs and 3762 fusion transcripts. We analyzed full-length transcriptome of red clover with PacBio SMRT. Those new findings provided important information for improving red clover draft genome annotation and fully characterization of red clover transcriptome.

Drought stress is a major factor in turfgrass management; however, the underlying mechanisms of turfgrass drought tolerance are not well understood. This greenhouse study was designed to investigate proline and hormone responses to drought stress in two tall fescue [ Festuca arundinacea (Schreb.)] cultivars differing in drought tolerance. The two cultivars, Van Gogh (relatively drought-tolerant) and AST7002 (relatively drought-sensitive), were established and grown under either well-watered (maintaining 90% container capacity) or drought stress (≈26% container capacity) and then re-watered. Drought stress reduced turfgrass quality, relative leaf water content (LWC), leaf indole-3-acetic acid (IAA) and cytokinin zeatin riboside (ZR) content, and increased proline and abscisic acid (ABA) content. ‘Van Gogh’ had greater turfgrass quality rating, LWC, proline, ABA, and ZR content relative to ‘AST7002’ under drought stress conditions. At the end of drought stress, leaf proline, ZR, and ABA content were 32%, 43%, and 50% higher in ‘Van Gogh’ relative to ‘AST7002’, respectively. No cultivar difference was observed under well-watered conditions. The results of this study suggest that the proline, ABA, and ZR content are associated with drought tolerance. Selection and use of the cultivars with higher proline, ABA, and ZR content under drought stress may be a practical approach to improve tall fescue drought tolerance.

Cadmium (Cd) toxicity seriously affects the growth and development of plants, so studies on uptake, translocation, and accumulation of Cd in plants are crucial for phytoremediation. However, the molecular mechanism of the plant response to Cd stress remains poorly understood. The main objective of this study was to reveal differentially expressed genes (DEGs) under lower (BT2_5) and higher (BT43) Cd concentration treatments in creeping bentgrass. A total of 463,184 unigenes were obtained from creeping bentgrass leaves using RNA sequencing technology. Observation of leaf tissue morphology showed that the higher Cd concentration damages leaf tissues. Four key transcription factor (TF) families, WRKY, bZIP, ERF, and MYB, are associated with Cd stress in creeping bentgrass. Our findings revealed that these four TFs play crucial roles during the creeping bentgrass response to Cd stress. This study is mainly focused on the molecular characteristics of DEGs under Cd stress using transcriptomic analysis in creeping bentgrass. These results provide novel insight into the regulatory mechanisms of respond to Cd stress and enrich information for phytoremediation.