Daniil Shchepkin

Dr. Daniil Shchepkin

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2010 in Biochemical and Biophysical Research Communications
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DSDaniil Shchepkin
Daniil Shchepkin
GKG.V. Kopylova
G.V. Kopylova
LNL.V. Nikitina
L.V. Nikitina
BKBoris Katsnelson
Boris Katsnelson
SBS.Y. Bershitsky
S.Y. Bershitsky

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ATAndrey Tsaturyan
Andrey Tsaturyan
EZElena Zaklyazminskaya
Elena Zaklyazminskaya
MPMargarita Polyak
Margarita Polyak
GKGalina Kopylova
Galina Kopylova
DSDaniil Shchepkin
Daniil Shchepkin
DLDmitrii Levitsky
Dmitrii Levitsky
Hypertrophic cardiomyopathy (HCM), caused by mutations in thin filament proteins, manifests as moderate cardiac hypertrophy and is associated with sudden cardiac death (SCD). We identified a new de novo variant, c.656A>T (p.D219V), in the TPM1 gene encoding cardiac tropomyosin 1.1 (Tpm) in a young SCD victim with post-mortem-diagnosed HCM. We produced recombinant D219V Tpm1.1 and studied its structural and functional properties using various biochemical and biophysical methods. The D219V mutation did not affect the Tpm affinity for F-actin but increased the thermal stability of the Tpm molecule and Tpm-F-actin complex. The D219V mutation significantly increased the Ca2+ sensitivity of the sliding velocity of thin filaments over cardiac myosin in an in vitro motility assay and impaired the inhibition of the filament sliding at low Ca2+ concentration. The molecular dynamics (MD) simulation provided insight into a possible molecular mechanism of the effect of the mutation that is most likely a cause of the weakening of the Tpm interaction with actin in the "closed" state and so makes it an easier transition to the “open” state. The changes in the Ca2+ regulation of the actin-myosin interaction characteristic of genetic HCM suggest that the mutation is likely pathogenic.

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AKAnastasia Khokhlova
Anastasia Khokhlova
TMTatiana Myachina
Tatiana Myachina
DVDenis Volzhaninov
Denis Volzhaninov
XBXenia Butova
Xenia Butova
AKAnastasia Михайловна Kochurova
Anastasia Михайловна Kochurova
DSDaniil Shchepkin
Daniil Shchepkin
Type 1 diabetes (T1D) leads to ischemic heart disease and diabetic cardiomyopathy. We tested the hypothesis that T1D differently affects the contractile function of the left and right ventricular free walls (LV, RV) and the interventricular septum (IS) using a rat model of alloxan-induced T1D. Single-myocyte mechanics and cytosolic Ca2+ concentration transients were studied on cardiomyocytes (CM) from LV, RV, and IS in the absence and presence of mechanical load. In addition, we analyzed the phosphorylation level of sarcomeric proteins and the characteristics of the actin-myosin interaction. T1D similarly affected the characteristics of actin-myosin interaction in all studied regions, decreasing the sliding velocity of native thin filaments over myosin in an in vitro motility assay and its Ca2+ sensitivity. A decrease in the thin-filament velocity was associated with increased expression of β-myosin heavy-chain isoform. However, changes in the mechanical function of single ventricular CM induced by T1D were different. T1D depressed the contractility of CM from LV and RV; it decreased the auxotonic tension amplitude and the slope of the active tension–length relationship. Nevertheless, the contractile function of CM from IS was principally preserved.

1 January 2021 in Biochemical and Biophysical Research Communications
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Journal Article
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AGAnastasiia D. Gonchar
Anastasiia D. Gonchar
GKGalina Kopylova
Galina Kopylova
AKAnastasia Михайловна Kochurova
Anastasia Михайловна Kochurova
VBValentina Y. Berg
Valentina Y. Berg
DSDaniil Shchepkin
Daniil Shchepkin
DLDmitrii Levitsky
Dmitrii Levitsky

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VNVictoria Nefedova
Victoria Nefedova
GKGalina Kopylova
Galina Kopylova
DSDaniil Shchepkin
Daniil Shchepkin
AKAnastasia Михайловна Kochurova
Anastasia Михайловна Kochurova
OKOlga Kechko
Olga Kechko
AMAlexander Matyushenko
Alexander Matyushenko
Tropomyosin (Tpm) mutations cause inherited cardiac diseases such as hypertrophic and dilated cardiomyopathies. We applied various approaches to investigate the role of cardiac troponin (Tn) and especially the troponin T (TnT) in the pathogenic effects of Tpm cardiomyopathy-associated mutations M8R, K15N, A277V, M281T, and I284V located in the overlap junction of neighboring Tpm dimers. Using co-sedimentation assay and viscosity measurements, we showed that TnT1 (fragment of TnT) stabilizes the overlap junction of Tpm WT and all Tpm mutants studied except Tpm M8R. However, isothermal titration calorimetry (ITC) indicated that TnT1 binds Tpm WT and all Tpm mutants similarly. By using ITC, we measured the direct KD of the Tpm overlap region, N-end, and C-end binding to TnT1. The ITC data revealed that the Tpm C-end binds to TnT1 independently from the N-end, while N-end does not bind. Therefore, we suppose that Tpm M8R binds to TnT1 without forming the overlap junction. We also demonstrated the possible role of Tn isoform composition in the cardiomyopathy development caused by M8R mutation. TnT1 dose-dependently reduced the velocity of F-actin-Tpm filaments containing Tpm WT, Tpm A277V, and Tpm M281T mutants in an in vitro motility assay. All mutations impaired the calcium regulation of the actin–myosin interaction. The M281T and I284V mutations increased the calcium sensitivity, while the K15N and A277V mutations reduced it. The Tpm M8R, M281T, and I284V mutations under-inhibited the velocity at low calcium concentrations. Our results demonstrate that Tpm mutations likely implement their pathogenic effects through Tpm interaction with Tn, cardiac myosin, or other protein partners.

1 January 2022 in Biochemical and Biophysical Research Communications
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Journal Article
Closed access
GKGalina V. Kopylova
Galina V. Kopylova
VBValentina Y. Berg
Valentina Y. Berg
AKAnastasia M. Kochurova
Anastasia M. Kochurova
AMAlexander M. Matyushenko
Alexander M. Matyushenko
SBSergey Y. Bershitsky
Sergey Y. Bershitsky
DSDaniil Shchepkin
Daniil Shchepkin