Photoplethysmography (PPG) signals provide a non-invasive method for monitoring cardiovascular health, including blood pressure levels, which are critical for the early detection and management of hypertension. This study leverages wavelet transformation and special purpose deep learning model, enhanced by signal processing and normalization, to classify blood pressure stages from PPG signals. The primary objective is to advance non-invasive hypertension monitoring, improving the accuracy and efficiency of these assessments. The study employed continuous wavelet transform (CWT) to prepare PPG signals for analysis using a special purpose PPG-NET designed by applying advanced deep-learning models. PPG-NET was verified by applying several pre-trained models, including Inception, MobileNetV2, InceptionResNetV2, and others to the PPG data. Rigorously five-fold cross-validated models were conducted to obtain the models' performance to ensure robustness and repeatability of results. The PPG-NET model demonstrated superior performance, achieving a perfect accuracy of 100 % in classifying the four stages of hypertension—normal, prehypertension, stage 1, and stage 2. The evaluation metrics reported include precision, sensitivity, and specificity, with the PPG-NET model achieving 100 % across all metrics. Other models showed varying levels of accuracy, with InceptionV3 also reaching 91.5 %, while some, like VGG-19, underperformed significantly. Integrating CWT and PPG-NET offers a promising avenue for enhancing non-invasive blood pressure monitoring. The PPG-NET model, in particular, showed potential for clinical application due to its high accuracy and reliability. This study showed the effectiveness of combining advanced computational techniques with traditional PPG analysis, potentially leading to more personalized and accessible hypertension management strategies.

Antimicrobial peptides (AMPs) are excellent at fighting many different infections. This demonstrates how important it is to make new AMPs that are even better at eliminating infections. The fundamental transformation in a variety of scientific disciplines, which led to the emergence of machine learning techniques, has presented significant opportunities for the development of antimicrobial peptides. Machine learning and deep learning are used to predict antimicrobial peptide efficacy in the study. The main purpose is to overcome traditional experimental method constraints. Gram-negative bacterium Escherichia coli is the model organism in this study. The investigation assesses 1,360 peptide sequences that exhibit anti- E. coli activity. These peptides’ minimal inhibitory concentrations have been observed to be correlated with a set of 34 physicochemical characteristics. Two distinct methodologies are implemented. The initial method involves utilizing the pre-computed physicochemical attributes of peptides as the fundamental input data for a machine-learning classification approach. In the second method, these fundamental peptide features are converted into signal images, which are then transmitted to a deep learning neural network. The first and second methods have accuracy of 74% and 92.9%, respectively. The proposed methods were developed to target a single microorganism (gram negative E.coli), however, they offered a framework that could potentially be adapted for other types of antimicrobial, antiviral, and anticancer peptides with further validation. Furthermore, they have the potential to result in significant time and cost reductions, as well as the development of innovative AMP-based treatments. This research contributes to the advancement of deep learning-based AMP drug discovery methodologies by generating potent peptides for drug development and application. This discovery has significant implications for the processing of biological data and the computation of pharmacology.

In the previous paper, we reconstructed the entire transcriptional network for all 2418 clock-associated genes in the model filamentous fungus, Neurospora crassa ( N. crassa ). Several authors have suggested that there is extensive post-transcriptional control in the genome-wide clock network (IEEE 3: 27, 2015). Here we have successfully reconstructed the entire clock network in N. crassa with a variable topology ensemble method (VTENS), assigning each clock-associated gene to the regulation of one or more of five transcription factors as well as to six RNA operons. The resulting network provides a unifying framework to explore the clock’s linkage to metabolism through post-transcriptional regulation, in which ~850 genes are predicted to fall under the regulatory control of an RNA operon. A unique feature of all of the RNA operons inferred is their functional connection to genes connected to the ribosome. We have been successful in distinguishing several hypotheses about regulatory topologies of the clock network through protein profiling of the regulators.

There are quintillions of data on deoxyribonucleic acid (DNA) and protein in publicly accessible data banks, and that number is expanding at an exponential rate. Many scientific fields, such as bioinformatics and drug discovery, rely on such data; nevertheless, gathering and extracting data from these resources is a tough undertaking. This data should go through several processes, including mining, data processing, analysis, and classification. This study proposes software that extracts data from big data repositories automatically and with the particular ability to repeat data extraction phases as many times as needed without human intervention. This software simulates the extraction of data from web-based (point-and-click) resources or graphical user interfaces that cannot be accessed using command-line tools. The software was evaluated by creating a novel database of 34 parameters for 1360 physicochemical properties of antimicrobial peptides (AMP) sequences (46240 hits) from various MARVIN software panels, which can be later utilized to develop novel AMPs. Furthermore, for machine learning research, the program was validated by extracting 10,000 protein tertiary structures from the Protein Data Bank. As a result, data collection from the web will become faster and less expensive, with no need for manual data extraction. The software is critical as a first step to preparing large datasets for subsequent stages of analysis, such as those using machine and deep-learning applications.

With both light entrainment data (L/D) and free running data in the dark (D/D), Variable Topology Ensemble Methods (VTENS) were used to reconstruct the entire genome-scale clock network involving 3380 genes and their products under the hypothesis that clock-controlled genes are both transcriptionally regulated and post-transcriptionally regulated through RNA operons. The clock network has 12 hubs with target genes surrounding twelve regulators, and 694 putative clock-controlled genes provide linkage between hubs in their joint regulation. There were 71 significant feedforward loops within this clock network, the majority of which involved genes lhp-1 and NCU06108 targeting genes connected with the ribosome and ribosome biogenesis. All 12 regulators target amino acid biosynthesis. The largest hub (768 genes) surrounded the post-transcriptional regulator lhp-1 defining an RNA operon. There appears to be no partitioning of light-regulated genes and circadian genes between the 12 hubs. The regulators lhp-1, has-1 , and rrp-3 appear to target putative clock-controlled genes in ribosome biogenesis. The combined hypothesis of 6 RNA operons and 5 transcriptional regulons was successful in describing the dynamics of the clock network with 3380 genes and their products with a $\chi ^{2} =2.133$ per data point for 60,759 mRNA time points. With little known about allosteric regulation of metabolism, the clock network provided a major link between gene regulation and metabolism.

Jordanian healthcare institutes have launched several programs since 2009 to establish health information systems (HISs). Nowadays, the generic expectation is that the use of HIS resources is performed on daily basis among healthcare staff. However, there can be still a noticeable barrier due to a lack of knowledge if medical doctors do not receive proper training on existing HISs. Moreover, the lack of studies on this area hinders the clarity about the received versus the required training skills among medical doctors. To support this research initiative, survey data have been collected from specialized medical doctors who are currently affiliated with five Jordanian universities to assess their need for HIS training. The results also aim to explore the extent of medical doctors’ use of HIS resources in Jordan. Moreover, they examine whether medical doctors require additional training on using HIS resources or not, as well as the main areas of required training programs. Specifically, this paper highlights the main topics that can be suitable subjects for enhanced training programs. The results show that most respondents use HISs in their daily clinical practices. However, most of them have not taken professional training on such systems. Hence, most of the respondents reported the need for additional training programs on several aspects of HIS resources. Moreover, based on the survey results, the most significant areas that require training are biomedical data analysis, artificial intelligence in medicine, health care management, and recent advances in electronic health records, respectively. Therefore, specialized medical doctors in Jordan need training on extracting useful and potential features of HISs. Education and training professionals in healthcare are recommended to establish training programs in Jordanian healthcare centers, which can further improve the quality of healthcare.