Solvation effects are essential for defining the shape of vibrational circular dichroism (VCD) spectra. Several approaches have been proposed to include them into computational models for calculating VCD signals, in particular those resting on the “cluster-in-a-liquid” model. Here we examine the capabilities of this ansatz on the example of flexible (1S,2S)-trans-1-amino-2-indanol solvated in dimethyl sulfoxide (DMSO). We compare cluster sets obtained from static calculations with results from explicit molecular dynamics (MD) trajectories based on either force field (FF) or first-principles (FP) methods. While the FFMD approach provides a broader sampling of configurational space, FPMD and time-correlation functions of dipole moments account for anharmonicity and entropy effects in the VCD calculation. They provide a means to evaluate the immediate effect of the solvent on the spectrum. This survey singles out several challenges associated with the use of clusters to describe solvation effects in systems showing shallow potential energy surfaces and non-covalent interactions. Static structures of clusters involving a limited number of solvent molecules satisfactorily capture the main effects of solvation in the bulk limit on the VCD spectra, if these structures are correctly weighted. The importance of taking into consideration their fluxionality, i.e. different solvent conformations sharing a same hydrogen bond pattern, and the limitations of small clusters for describing the solvent dynamics are discussed.
22 February 2018 in The Journal of Physical Chemistry Letters
Helium is considered an almost ideal tagging atom for cold messenger spectroscopy experiments. Although helium is bound very weakly to the ionic molecule of interest, helium tags can lead to shifts and broadenings that we recorded near 963.5 nm in the electronic excitation spectrum of C60+ solvated with up to 100 helium atoms. Dedicated quantum calculations indicate that the inhomogeneous broadening is due to different binding energies of helium to the pentagonal and hexagonal faces of C60+, their dependence on the electronic state, and the numerous isomeric structures that become available for intermediate coverage. Similar isomeric effects can be expected for optical spectra of most larger molecules surrounded by nonabsorbing weakly bound solvent molecules, a situation encountered in many messenger-tagging spectroscopy experiments.
Dimers of tetracene molecules are formed inside helium nanodroplets and identified through covariance analysis of the emission directions of kinetic tetracene cations stemming from femtosecond laser-induced Coulomb explosion. Next, the dimers are aligned in either one or three dimensions under field-free conditions by a nonresonant, moderately intense laser pulse. The experimental angular covariance maps of the tetracene ions are compared to calculated covariance maps for seven different dimer conformations and found to be consistent with four of these. Additional measurements of the alignment-dependent strong-field ionization yield of the dimer narrow the possible conformations down to either a slipped-parallel or parallel-slightly rotated structure. According to our quantum chemistry calculations, these are the two most stable gas-phase conformations of the dimer and one of them is favorable for singlet fission.
4 December 2009 in The Journal of Physical Chemistry A
Far-infrared multiple photon dissociation spectroscopy is used in combination with density functional theory calculations to determine the structures of isolated Au n+ ( n ≤ 9) clusters.